CX290549

Overview
NameCX290549
Unique NameCX290549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig135 contig Ccv1_Contig135:644..1175. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX290549 vs. ExPASy Swiss-Prot
Match: TLC1_SOLTU (Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.544e-17
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   13 GGILLVIVLAWLGAARSLDTQFTALRQXXXXXXXXXRAAVKIPVVSENEGGNGTLPGGSALNAAG----ETPSEASSPRNI 243
            GG+LLVIVLAWLGAA+SLD QFT LRQ         RA++KIPVVS+NE GNG L   S+LN AG       SE SSPR++
Sbjct:  551 GGVLLVIVLAWLGAAKSLDGQFTQLRQEEDLEKEMERASLKIPVVSQNENGNGPLSSESSLNPAGGDSTNASSEPSSPRSL 631
The following BLAST results are available for this feature:
BLAST of CX290549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TLC1_SOLTU4.544e-1759.26Plastidic ATP/ADP-transporter OS=Solanum tuberosum... [more]
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Properties
Property NameValue
Genbank descriptionC02025D07SK IF1 Citrus clementina cDNA clone C02025D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290549 ID=CX290549; Name=CX290549; organism=Citrus clementina; type=EST; length=532bp
GATTCGGCCGAGGGAGGGATACTTTTGGTGATTGTTCTTGCATGGTTAGG
AGCAGCCAGGTCTTTAGATACCCAATTTACAGCTTTGCGTCAGGAAGAAG
AGCTTGAGAAGGAGATGGAAAGAGCTGCTGTTAAGATCCCAGTTGTCTCT
GAAAATGAAGGCGGGAATGGTACTCTTCCAGGTGGATCAGCTTTGAATGC
AGCAGGTGAGACACCCAGTGAAGCATCTAGTCCACGCAATATCTGAAATA
GTTTCTTCCAATTCCTTGCCGCATGAAGAATGAGAAGCATCAATACTTGA
GGTATTGCTTGTAGGATCTTCTCAAATTACACAAATAATAGTAGCTAAAC
AAAGTATGAGCCCGTCTGTCTTAATTCCGCCTTTTTCCCGTAGATAATGA
GTTTAGTATCTGTTTACTCATACATTCATGTTCTTTGTAGAATTCGAATT
TGGTTTTTTATTGATAGCAACAACATTAAATTTAATAATTTCTTGATTAT
ATCTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
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