CX290550

Overview
NameCX290550
Unique NameCX290550
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290550 vs. ExPASy Swiss-Prot
Match: OTUBL_ARATH (Ubiquitin thioesterase otubain-like OS=Arabidopsis thaliana GN=At1g28120 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.374e-41
Identity = 81/107 (75.70%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    4 RSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK 324
            R++FFEPFI GL+NATV+QFCKSSVEPMGEESDH+HITALSDALGV IRVVYLDRSSCDSGG +VNHHDF+P             E + PFITLLYRPGHYDILYPK
Sbjct:  193 RADFFEPFITGLSNATVDQFCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSSCDSGGVTVNHHDFVPV----GITNEKDEEASAPFITLLYRPGHYDILYPK 295          
BLAST of CX290550 vs. ExPASy Swiss-Prot
Match: OTUB1_RAT (Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus GN=Otub1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 KRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 318
            + S+FFE FI G    TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR      G + N H F               E + P + LLYRPGHYDILY
Sbjct:  185 RESKFFEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE----GGTTNPHVF--------------PEGSEPKVYLLYRPGHYDILY 270          
BLAST of CX290550 vs. ExPASy Swiss-Prot
Match: OTUB1_MOUSE (Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Otub1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 KRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 318
            + S+FFE FI G    TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR      G + N H F               E + P + LLYRPGHYDILY
Sbjct:  185 RESKFFEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE----GGTTNPHVF--------------PEGSEPKVYLLYRPGHYDILY 270          
BLAST of CX290550 vs. ExPASy Swiss-Prot
Match: OTUB1_HUMAN (Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OTUB1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 49/106 (46.23%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 KRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 318
            + S+FFE FI G    TV++FC+  VEPM +ESDH+HI AL+ AL V I+V Y+DR      G + N H F               E + P + LLYRPGHYDILY
Sbjct:  185 RESKFFEHFIEG--GRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGE----GGTTNPHIF--------------PEGSEPKVYLLYRPGHYDILY 270          
BLAST of CX290550 vs. ExPASy Swiss-Prot
Match: OTUBL_DROME (Ubiquitin thioesterase otubain-like OS=Drosophila melanogaster GN=CG4968 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.767e-15
Identity = 48/107 (44.86%), Postives = 61/107 (57.01%), Query Frame = 1
Query:    1 KRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYP 321
            + ++F++ FI G  + T+E F    VEPM +ESDH+HI AL  ALG  +RV YLDR      G +V  HDF               E + P I L+YRPGHYDILYP
Sbjct:  175 EEADFYQNFIEG--DLTIEAFRHLEVEPMYKESDHIHIIALCTALGAGVRVEYLDRGE----GGTVKAHDF--------------PEGSEPRIYLIYRPGHYDILYP 261          
BLAST of CX290550 vs. ExPASy Swiss-Prot
Match: OTUBL_CAEEL (Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans GN=C25D7.8 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 KRSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILYPK 324
            + SE + PFI      TV Q+C+  +EPM +++DH+ I +L  A G  +R+ Y+DR++  +GG    H+D    P D         +   P ITLLYRPGHYD++Y K
Sbjct:  183 QNSEEYAPFID--EGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGW---HYDI---PSD--------DQQIAPEITLLYRPGHYDVIYKK 274          
BLAST of CX290550 vs. ExPASy Swiss-Prot
Match: OTUB2_MOUSE (Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Otub2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 40/105 (38.10%), Postives = 53/105 (50.48%), Query Frame = 1
Query:    4 RSEFFEPFILGLTNATVEQFCKSSVEPMGEESDHVHITALSDALGVPIRVVYLDRSSCDSGGASVNHHDFIPTPGDCPNATSGSTETTIPFITLLYRPGHYDILY 318
            R++FF  FI       ++ FC   VEPM  E DHV ITALS AL + ++V Y+D         ++NHH F               E  IP + LLY+  HY+ILY
Sbjct:  146 RADFFRHFID--EEMDIKDFCTHEVEPMAMECDHVQITALSQALNIALQVEYVDEMD-----TALNHHVF--------------PEAAIPSVYLLYKTSHYNILY 229          
The following BLAST results are available for this feature:
BLAST of CX290550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
OTUBL_ARATH1.374e-4175.70Ubiquitin thioesterase otubain-like OS=Arabidopsis... [more]
OTUB1_RAT4.449e-1646.23Ubiquitin thioesterase OTUB1 OS=Rattus norvegicus ... [more]
OTUB1_MOUSE4.449e-1646.23Ubiquitin thioesterase OTUB1 OS=Mus musculus GN=Ot... [more]
OTUB1_HUMAN4.449e-1646.23Ubiquitin thioesterase OTUB1 OS=Homo sapiens GN=OT... [more]
OTUBL_DROME3.767e-1544.86Ubiquitin thioesterase otubain-like OS=Drosophila ... [more]
OTUBL_CAEEL2.699e-1338.89Ubiquitin thioesterase otubain-like OS=Caenorhabdi... [more]
OTUB2_MOUSE9.601e-1138.10Ubiquitin thioesterase OTUB2 OS=Mus musculus GN=Ot... [more]
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Properties
Property NameValue
Genbank descriptionC02025D08SK IF1 Citrus clementina cDNA clone C02025D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290550 ID=CX290550; Name=CX290550; organism=Citrus clementina; type=EST; length=650bp
AAGCGCTCAGAGTTTTTTGAACCCTTTATATTGGGACTAACAAATGCAAC
TGTGGAACAGTTTTGCAAGTCATCGGTGGAACCAATGGGTGAAGAGAGTG
ACCATGTACACATTACCGCCCTTTCAGATGCATTAGGTGTTCCAATCCGT
GTTGTATACCTTGATCGCAGCTCTTGTGATTCTGGTGGTGCCAGTGTGAA
TCATCATGATTTCATTCCCACTCCTGGAGATTGTCCAAATGCTACTAGTG
GCAGCACTGAGACCACAATTCCTTTTATTACTTTATTGTATCGTCCAGGC
CACTATGACATTCTCTACCCGAAGTGATGCACTTGCTGGTTGAATTGCTG
ACAATGCCTGGCCTGTGAAAGGAGCTCTCAAGATAATCTTGTTTGGACAT
GACAATGAGCTAAGCTCATCATTCTTGCAGTAACTTGTGGTTATGAACTG
TTACATGTTTTGGCTTGCGCGTGTGGGGACATAACCACACTCGTAGCTTT
TTGTTCAGAACTGCTTTAGATGAGCATGTTCTCACCTGGTATTCATCTGA
ACTTGAATGATTGAAGAAAGAATTGCTCATTCTGCAATGTGAATTAAGAA
TCTAGTGCTTGGAACTTCTCTGAACATGTACAATGCGGCAATATTTTTAA
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