CX290640

Overview
NameCX290640
Unique NameCX290640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2938 contig Ccv1_Contig2938:554..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 6.361e-46
Identity = 94/172 (54.65%), Postives = 116/172 (67.44%), Query Frame = 2
Query:  107 EQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGN-RFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            E+  FP+WV   +RKLLQ+     N +VA+DG+GN++T+ EAI AASG+ RFVIYVK GVY E +   K  + L GDG   TIITG  +   GT+   +AT    GDGFIAR I F NTAG   EQA+AL   SD +VFY+CS   YQDTLY  + RQFYRD D+YGT+DFI
Sbjct:  182 EKDGFPSWVKPGDRKLLQSSTPKDNAVVAKDGSGNFKTIKEAIDAASGSGRFVIYVKQGVYSENLEIRKKNVMLRGDGIGKTIITGSKSVGGGTTTFNSATVAAVGDGFIARGITFRNTAGASNEQAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFI 353          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.123e-45
Identity = 101/198 (51.01%), Postives = 124/198 (62.63%), Query Frame = 2
Query:   26 SNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            SN L LV+ I +   PK  +            P WV+A  R+LL   R  A+V+VA+DG+G+YRTV EA++AA GN                           GK  T+I GDD+A  GTS+P TAT T+TGDGFIARDIG  N AGP+G QA+AL++ SD +V YRCSI+GYQDTLYA ALRQFYR+ DIYGTIDFI
Sbjct:  188 SNSLTLVDTIMKNPKPKTKSTA---------LPRWVTAGERRLLVG-RARAHVVVAKDGSGDYRTVMEAVTAAHGN---------------------------GKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFI 348          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.385e-45
Identity = 94/171 (54.97%), Postives = 115/171 (67.25%), Query Frame = 2
Query:  119 FPNWVSAKNRKLLQA-PRINANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            FP WV   +RKLLQ  PR  AN++VAQDG+GN +T+ EA++AAS   G+R+VIY+KAG Y E I      I  +GDG   TIITG  +   G +   +AT  + GD FIARDI   NTAGP   QA+AL   SD +VFYRCS  GYQDTLY  + RQFYR+ DIYGT+DFI
Sbjct:  183 FPTWVKPGDRKLLQTTPR--ANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFI 351          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.559e-44
Identity = 93/174 (53.45%), Postives = 121/174 (69.54%), Query Frame = 2
Query:  113 GDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            G  P+WV  K+RKLLQA  ++ + IVAQDGTGN+  V++A+ AA   S  R+VIY+K G YKE  +I+  K  + +IGDG   TII+G+ +   G +   +ATF ++G GFIARDI F NTAGP+  QA+AL   SD +VFYRC+I GYQDTLY   +RQFYRD  I GT+DFI
Sbjct:  186 GQIPSWVKTKDRKLLQADGVSVDAIVAQDGTGNFTNVTDAVLAAPDYSMRRYVIYIKRGTYKENVEIKKKKWNLMMIGDGMDATIISGNRSFVDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYRDCKISGTVDFI 359          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.954e-44
Identity = 96/174 (55.17%), Postives = 119/174 (68.39%), Query Frame = 2
Query:  122 PNWVSAKNRKLLQA--PRI-NANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKI--RTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            P W++  +  L+    P + + N +VA DG G YRT++EAI+ A   S  R+VIYVK GVYKE I  +  K  I L+GDG   TIITGD N  +G +   TAT  ++G GFIA+DI F NTAGPQ  QA+AL V SD + FYRCS+ GYQDTLYA +LRQFYRD +IYGTIDFI
Sbjct:  218 PEWLTETDESLMMRHDPSVMHPNTVVAIDGKGKYRTINEAINEAPNHSTKRYVIYVKKGVYKENIDLKKKKTNIMLVGDGIGQTIITGDRNFMQGLTTFRTATVAVSGRGFIAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLRQFYRDCEIYGTIDFI 391          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.955e-43
Identity = 94/176 (53.41%), Postives = 122/176 (69.32%), Query Frame = 2
Query:  119 FPNWVSAKNRKLLQAP----RINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            FP+W++A +RKLL++     ++ ANV+VA+DGTG ++TV+EA++AA   S  R+VIYVK GVYKE I   K    + L+GDGK  TIITG  N   G++   +AT    GDGF+A+DI F NTAGP   QA+AL V++D TV  RC I  YQDTLY   LRQFYRD+ I GT+DFI
Sbjct:  222 FPSWLTALDRKLLESSPKTLKVTANVVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKDATIITGSLNVIDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYITGTVDFI 397          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.267e-42
Identity = 93/183 (50.82%), Postives = 119/183 (65.03%), Query Frame = 2
Query:  101 DEEQGD---FPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA-----SGNRFVIYVKAGVYKEK--IRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            D   GD   FP WVS K R+LLQ   + AN++VA+DG+G+++TV  AI  A     +  RFVIYVK G+Y+E   +R N D I L+GDG   TIITG  + + G +   +AT  I G  FIA+ I F NTAGP   QA+AL  +SD ++FYRCSI GYQDTL   + RQFYR+  IYGT+DFI
Sbjct:  196 DSTTGDSKGFPTWVSRKERRLLQLQSVRANLVVAKDGSGHFKTVQAAIDVAGRRKVTSGRFVIYVKRGIYQENLNVRLNNDNIMLVGDGMRYTIITGGRSVKGGYTTYSSATAGIEGLHFIAKGIAFQNTAGPAKGQAVALRSSSDLSIFYRCSIEGYQDTLMVHSQRQFYRECYIYGTVDFI 378          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.241e-41
Identity = 92/193 (47.67%), Postives = 127/193 (65.80%), Query Frame = 2
Query:   59 RASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAP--RINANVIVAQDGTGNYRTVSEAISAAS--GNRFVIYVKAGVYKEKIR--TNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            ++S   N T  R+L  +  DFP WVS+ +RKLL+A    +  + +VA DG+G + +V+EA+++      R VI++ AG YKE +   + +  + L+GDGK  T+I G  + R G +   +AT    GDGFIARDI F N+AGP  EQA+AL V SD +V YRCSI GYQD+LY L+ RQFYR+TDI GT+DFI
Sbjct:  187 KSSSSSNLTGGRKLLSDH-DFPTWVSSSDRKLLEASVEELRPHAVVAADGSGTHMSVAEALASLEKGSGRSVIHLTAGTYKENLNIPSKQKNVMLVGDGKGKTVIVGSRSNRGGWNTYQSATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDRSVVYRCSIDGYQDSLYTLSKRQFYRETDITGTVDFI 378          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.621e-41
Identity = 91/188 (48.40%), Postives = 122/188 (64.89%), Query Frame = 2
Query:   89 NRRL---DEEQGDFPNWVSAKNRKLLQAP--RINANVIVAQDGTGNYRTVSEAISAASGN---RFVIYVKAGVYKE---KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            NRRL   +E +  FP W+  K R++L+ P  +I A++IV++DG G  +T+SEAI  A  N   R +IYVKAG Y+E   K+   K  +  +GDGK  T+I+G  +     +   TA+F  TG GFIARDI F N AGP   QA+AL + +DH V YRC+I GYQDTLY  + RQF+R+ DIYGT+DFI
Sbjct:  249 NRRLLGVEEREEKFPRWMRPKEREILEMPVSQIQADIIVSKDGNGTCKTISEAIKKAPQNSTRRIIIYVKAGRYEENNLKVGRKKINLMFVGDGKGKTVISGGKSIFDNITTFHTASFAATGAGFIARDITFENWAGPAKHQAVALRIGADHAVIYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFI 436          
BLAST of CX290640 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.717e-41
Identity = 91/187 (48.66%), Postives = 120/187 (64.17%), Query Frame = 2
Query:   89 NRRL--DEEQGDFPNWVSAKNRKLLQAPR--INANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE---KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDIYGTIDFI 619
            NR+L   EE  + PNW+  ++R+LL  P   I A++ V++DG+G ++T++EAI  A   S  RFVIYVKAG Y+E   K+   K  +  IGDGK  T+ITG  +     +   TATF  TG GFI RD+ F N AGP   QA+AL V  DH V YRC+I GYQD LY  + RQF+R+ +IYGT+DFI
Sbjct:  239 NRKLLGTEETEELPNWLKREDRELLGTPTSAIQADITVSKDGSGTFKTIAEAIKKAPEHSSRRFVIYVKAGRYEEENLKVGRKKTNLMFIGDGKGKTVITGGKSIADDLTTFHTATFAATGAGFIVRDMTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFI 425          
The following BLAST results are available for this feature:
BLAST of CX290640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME17_ARATH6.361e-4654.65Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME54_ARATH4.123e-4551.01Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME2_CITSI5.385e-4554.97Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME_PRUPE4.559e-4453.45Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME22_ARATH5.954e-4455.17Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME18_ARATH2.955e-4353.41Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME60_ARATH3.267e-4250.82Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME35_ARATH1.241e-4147.67Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME34_ARATH1.621e-4148.40Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME61_ARATH4.717e-4148.66Probable pectinesterase/pectinesterase inhibitor 6... [more]

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Properties
Property NameValue
Genbank descriptionC01010C01SK Veg1 Citrus clementina cDNA clone C01010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290640 ID=CX290640; Name=CX290640; organism=Citrus clementina; type=EST; length=620bp
CNNNNNNNNNNNNNNNNNNNNNNNNAGTAATCCTTTAGCCCTTGTCAACA
GGATAGACAGGGCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTA
GATGAGGAACAAGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAA
ACTGCTGCAGGCCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATG
GAACTGGCAATTATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGA
AATCGTTTTGTGATTTATGTGAAGGCAGGTGTTTATAAGGAGAAAATTCG
AACTAACAAGGACGGTATTACTTTGATAGGAGATGGCAAATACACTACTA
TTATTACTGGTGATGATAATGCTCGTAGAGGCACTTCCATGCCTGGCACC
GCCACTTTCACAATCACAGGTGATGGATTTATCGCACGAGATATCGGATT
TCATAACACAGCAGGACCCCAAGGAGAGCAAGCATTAGCTCTAAACGTAG
CCTCAGATCATACGGTCTTTTACAGGTGCAGCATTGCAGGCTACCAAGAC
ACACTATACGCCCTCGCTCTGCGTCAGTTCTACAGAGACACCGACATCTA
CGGGACCATCGACTTCATAT
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