CX290840

Overview
NameCX290840
Unique NameCX290840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290840 vs. ExPASy Swiss-Prot
Match: FABI_BRANA (Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 2.918e-80
Identity = 90/106 (84.91%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:   46 TRAMAESSTNKPISGLPIDLKGKRAFIAGVADDNGYGWAIAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDESRVLPDGSLMEITKIYPLDAIYDKLEDVPEDV 363
            T+AM+ESS +K  SGLPIDL+GKRAFIAG+ADDNGYGWA+AKSLAAAGAEILVGTWVPALNIFETSLRRGKFD+SRVLPDGSLMEI K+YPLDA++D  EDVPEDV
Sbjct:   70 TKAMSESSESKASSGLPIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNPEDVPEDV 175

HSP 2 Score: 131.724 bits (330), Expect = 2.918e-80
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 2 
Query:  446 VKSNKRYSGSSKWTVQECAESVKQDFGSIDILVHSLANGPEVSKPLLETSRNGXXXXXXXXXXXXXXXXKHFIPLMNPGGSSLSLTYIASERI 724
            VK+NKRY+GSS WTVQE AE V+QDFGSIDILVHSLANGPEVSKPLLETSR G                 HF+P+MNPGG+S+SLTYIASERI
Sbjct:  175 VKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLPIMNPGGASISLTYIASERI 267
The following BLAST results are available for this feature:
BLAST of CX290840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FABI_BRANA2.918e-8084.91Enoyl-[acyl-carrier-protein] reductase [NADH], chl... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02027G04SK IF1 Citrus clementina cDNA clone C02027G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290840 ID=CX290840; Name=CX290840; organism=Citrus clementina; type=EST; length=726bp
GAGGCGGAGTTTTCATCATCTTCAGTAAAATTTGATAAGGTTGTAACAAG
GGCAATGGCTGAATCTAGCACTAACAAGCCTATTTCCGGATTGCCTATTG
ATTTGAAAGGTAAGAGGGCATTTATTGCTGGTGTAGCTGACGACAACGGA
TATGGTTGGGCTATAGCAAAATCTCTTGCTGCTGCAGGAGCTGAAATTTT
GGTTGGAACATGGGTTCCTGCTTTGAACATTTTTGAAACCAGTCTGCGAC
GTGGAAAATTTGATGAATCTCGTGTGTTGCCAGATGGTTCTTTGATGGAA
ATCACTAAAATATATCCCCTAGATGCTATCTATGACAAGCTTGAGGATGT
GCCTGAGGATGTAATGAAATATGTAGTTTCTAATGTGTATGCGAAAGTAG
GTGACTGCTTCTGCAATAACAATTTTTTCTTGTCATTTTCTGCAGGTAAA
ATCAAACAAGCGCTATTCAGGGTCCTCTAAATGGACTGTTCAGGAATGTG
CTGAATCTGTCAAACAGGATTTTGGCAGCATTGACATCCTAGTGCACTCA
CTTGCCAATGGACCAGAGGTGAGCAAGCCTCTGTTGGAGACTTCAAGGAA
CGGGTATCTTGCGGCTTTATCTGCTTCGAGTTACTCTTATGTTTCTCTAC
TCAAGCATTTCATTCCATTAATGAACCCAGGTGGTTCTTCACTTTCGCTT
ACATACATTGCTTCCGAGAGGATCAT
back to top