CX290843
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PR19B_ARATH (Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana GN=PRP19B PE=1 SV=3) HSP 1 Score: 268.47 bits (685), Expect = 2.631e-71 Identity = 128/174 (73.56%), Postives = 152/174 (87.36%), Query Frame = 3 Query: 3 VSDAGTDGRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 524 ++ D + YT+AAFHPDGLILGTGTS+++VKIWDVKSQANVAKFDGH G VTAISFSENGY+LATAA DGV+LWDLRKL+NF+SF S+D+ NSV+FD SGSYL +A++DI+VYQ ASVKA+WN IKT PDLSGTGKATCVKFG DA+Y+AVGSMDRNLR+FGLPG++ Sbjct: 344 LAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFSENGYFLATAAEDGVRLWDLRKLRNFKSFLSADA----NSVEFDPSGSYLGIAASDIKVYQTASVKAEWNLIKTLPDLSGTGKATCVKFGSDAQYVAVGSMDRNLRIFGLPGDE 513
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PR19A_ARATH (Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 2.723e-68 Identity = 125/167 (74.85%), Postives = 147/167 (88.02%), Query Frame = 3 Query: 39 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGNDAPSES 539 YT+AAFHPDGLILGTGT++++VKIWDVKSQANVAKF GH G +T+ISFSENGY+LATAA DGV+LWDLRKLKNFR+F+ D+ NSV+FDHSGSYL +A++DIRV+Q ASVKA+WN IKT PDLSGTGKAT VKFG D+KYIAVGSMDRNLR+FGLP +D +S Sbjct: 357 YTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHNGEITSISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDA----NSVEFDHSGSYLGIAASDIRVFQAASVKAEWNPIKTLPDLSGTGKATSVKFGLDSKYIAVGSMDRNLRIFGLPDDDNTEDS 519
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP19_RAT (Pre-mRNA-processing factor 19 OS=Rattus norvegicus GN=Prpf19 PE=2 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36 Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 42 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD SG+YLA+ D+++Y + W I F + SG T V FG AK+IA MDR+L+ + L Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP19_MOUSE (Pre-mRNA-processing factor 19 OS=Mus musculus GN=Prpf19 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36 Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 42 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD SG+YLA+ D+++Y + W I F + SG T V FG AK+IA MDR+L+ + L Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36 Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 42 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD SG+YLA+ D+++Y + W I F + SG T V FG AK+IA MDR+L+ + L Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP19_CHICK (Pre-mRNA-processing factor 19 OS=Gallus gallus GN=PRPF19 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36 Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 42 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD SG+YLA+ D+++Y + W I F + SG T V FG AK+IA MDR+L+ + L Sbjct: 355 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 505
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36 Identity = 81/158 (51.27%), Postives = 105/158 (66.46%), Query Frame = 3 Query: 42 TSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 T A FHPDGLI GTGT ++ +KIWD+K + NVA F GH G +T+I+FSENGYYLATAA D VKLWDLRKLKNF++ + D+ S+ FD SG+YLA+ D+++Y + W I F + SG T V FG AK+IA MDR+L+ + L Sbjct: 354 TCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSENGYYLATAADDSSVKLWDLRKLKNFKTLQ-LDNNFEVKSLIFDQSGTYLALGGTDVQIY----ICKQWTEILHFTEHSGL--TTGVAFGHHAKFIASTGMDRSLKFYSL 504
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP19_CAEEL (Pre-mRNA-processing factor 19 homolog OS=Caenorhabditis elegans GN=T10F2.4 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 4.387e-34 Identity = 75/155 (48.39%), Postives = 106/155 (68.39%), Query Frame = 3 Query: 45 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASADIRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 506 S FHPDGLI GTG ++A+VKIWD+K+Q A F GH AV +I+FSENGYYLAT + DG VKLWDLRKLKN ++F +++ + P NS+ FD +G++L + ++V V S W+ + + D S G T V+FG +A+ + S+D++LRVF Sbjct: 343 SIEFHPDGLIFGTGAADAVVKIWDLKNQTVAAAFPGHTAAVRSIAFSENGYYLATGSEDGEVKLWDLRKLKNLKTF-ANEEKQPINSLSFDMTGTFLGIGGQKVQVLHVKS----WSEVVSLSDHS--GPVTGVRFGENARSLVTCSLDKSLRVF 490
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: PRP19_DICDI (Pre-mRNA-processing factor 19 homolog OS=Dictyostelium discoideum GN=prp19 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19 Identity = 64/165 (38.79%), Postives = 88/165 (53.33%), Query Frame = 3 Query: 39 YTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRSFESSDSETPT------NSVDFDHSGSYLAVASAD-IRVYQVASVKADWNCIKTFPDLSGTGK--ATCVKF---GPDAKYIAVGSMDRNL 497 YTS AFHPDG+ GT +VKI+D+KS+ N F G AV ISFSENGYYL A ++ VKL+DLRK + S D +T T S++FD+S YL VAS++ I +Y S K P +S + C+ F P++ + S +N+ Sbjct: 355 YTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNFQGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKA---ATKNSPDIQTITLDNQQIKSINFDYSSQYLGVASSNQINLYSCKS--------KQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKNI 508
BLAST of CX290843 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.873e-17 Identity = 53/170 (31.18%), Postives = 89/170 (52.35%), Query Frame = 3 Query: 24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 524 G S F+PDG L +G+S+ V++W++ S + F GH V ++ F+ +G LA+ + D V+LWD+ K +F+ + NSV F+ GS LA S D +R+++++S K C+ TF T + V F PD +A GS D+ +R++ + + Sbjct: 1198 GHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNW--VNSVAFNPDGSMLASGSGDQTVRLWEISSSK----CLHTFQ--GHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGE 1359 HSP 2 Score: 84.3445 bits (207), Expect = 7.037e-16 Identity = 56/167 (33.53%), Postives = 89/167 (53.29%), Query Frame = 3 Query: 33 EGYTS----AAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 +GYTS F P+G+ L G+S+ +V++WD+ S+ + GH V A++FS +G LA+ + D V+LWD+ K + S NSV F+ GS LA S+D +R++++ S K C+ TF T V F PD +A GS D+ +R++ + Sbjct: 1113 QGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSW--VNSVVFNPDGSTLASGSSDQTVRLWEINSSK----CLCTFQ--GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI 1271 HSP 3 Score: 82.8037 bits (203), Expect = 2.047e-15 Identity = 52/166 (31.33%), Postives = 87/166 (52.41%), Query Frame = 3 Query: 24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 G S F+PDG +L +G+S+ V++WD+ S + F GH V +++F+ +G LA+ + D V+LW++ K +F+ S +SV F G+ LA S D +R++ ++S C+ TF L T V F PD +A GS D+ +R++ + Sbjct: 1240 GHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSW--VSSVTFSPDGTMLASGSDDQTVRLWSISS----GECLYTF--LGHTNWVGSVIFSPDGAILASGSGDQTVRLWSI 1397 HSP 4 Score: 80.8777 bits (198), Expect = 7.780e-15 Identity = 52/164 (31.71%), Postives = 84/164 (51.22%), Query Frame = 3 Query: 24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 506 G + AF PDG L +G+ + V++WD+ S + GH V ++ F+ +G LA+ + D V+LW++ K +F+ S NSV F+ GS LA S+D +R++ ++S K C+ TF T V F PD +A GS D+ +R++ Sbjct: 1156 GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSW--VNSVVFNPDGSMLASGSSDKTVRLWDISSSK----CLHTFQ--GHTNWVNSVAFNPDGSMLASGSGDQTVRLW 1311 HSP 5 Score: 77.411 bits (189), Expect = 8.602e-14 Identity = 53/169 (31.36%), Postives = 87/169 (51.48%), Query Frame = 3 Query: 24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVK---FGPDAKYIAVGSMDRNLRVFGL 512 G S F P+ L+L +G+S+ V++WD+ S + F GH G V +++F+ +G LAT + D V+LWD+ + F F+ S SV F G+ LA S D +R++ ++S NC+ T G +CV+ F PD +A G D+ +R++ + Sbjct: 946 GHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTS--CVRSVVFSSDGAMLASGSDDQTVRLWDISS----GNCLYTL-----QGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDI 1103 HSP 6 Score: 72.0182 bits (175), Expect = 3.614e-12 Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 3 Query: 24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGK-ATCVKFGPDAKYIAVGSMDRNLRVFGLPGND 524 G S AF+PDG +L +G+ + V++W++ S + F GH V++++FS +G LA+ + D V+LW + + +F + SV F G+ LA S D +R++ ++S K C+ T L G + F PD +A GS D+ +R++ + + Sbjct: 1282 GHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNW--VGSVIFSPDGAILASGSGDQTVRLWSISSGK----CLYT---LQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGE 1443 HSP 7 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 47/157 (29.94%), Postives = 76/157 (48.41%), Query Frame = 3 Query: 45 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHDG-VKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVF 506 S F PDG +L +G + +V++WD+ S + G+ V + FS NG LA + D V+LWD+ K + + + N+V F G+ LA S D +R++ ++S K C+ T V F PD +A GS D+ +R++ Sbjct: 1079 SVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNW--VNAVAFSPDGATLASGSGDQTVRLWDISSSK----CLYILQ--GHTSWVNSVVFNPDGSTLASGSSDQTVRLW 1227 HSP 8 Score: 68.1662 bits (165), Expect = 5.219e-11 Identity = 46/159 (28.93%), Postives = 79/159 (49.69%), Query Frame = 3 Query: 45 SAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRVFGL 512 + AF PDG + TG S +V+ W+ + + GH V ++ FS++G LA+ + D V+LWD+ + ++F+ S SV F + LA S+D +R++ ++S C+ F TG V F D +A GS D+ +R++ + Sbjct: 869 TVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSR--VRSVVFSPNSLMLASGSSDQTVRLWDISS----GECLYIFQ--GHTGWVYSVAFNLDGSMLATGSGDQTVRLWDI 1019 HSP 9 Score: 68.1662 bits (165), Expect = 5.219e-11 Identity = 49/169 (28.99%), Postives = 80/169 (47.34%), Query Frame = 3 Query: 24 GRPEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQANVAKFDGHVGAVTAISFSENGYYLATAAHD-GVKLWDLRKLKNFRSFESSDSETPTNSVDFDHSGSYLAVASAD--IRVYQVASVKADWNCIKTFPDLSGTGKATCVK---FGPDAKYIAVGSMDRNLRVFGL 512 G S F DG +L +G+ + V++WD+ S + F GH V ++ FS N LA+ + D V+LWD+ + F+ SV F+ GS LA S D +R++ ++S + C F G +CV+ F D +A GS D+ +R++ + Sbjct: 904 GHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGW--VYSVAFNLDGSMLATGSGDQTVRLWDISSSQ----CFYIF-----QGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDI 1061 The following BLAST results are available for this feature:
BLAST of CX290843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290843 ID=CX290843; Name=CX290843; organism=Citrus clementina; type=EST; length=726bpback to top |