CX290848

Overview
NameCX290848
Unique NameCX290848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10696 contig Ccv1_Contig10696:1595..2281. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290848 vs. ExPASy Swiss-Prot
Match: AGD3_ARATH (ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.411e-33
Identity = 67/107 (62.62%), Postives = 86/107 (80.37%), Query Frame = 1
Query:   88 GTSEGQTMDDLEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAIESNFADSEILAILSDSHG*N 408
            G+S   + +   G +LLH AC+ AD+GM+ELLLQYGAN+NA+DS G TPLH C+LRGK   A+LLLTRGADP A+NREGKT+L++A ESNF D E+LA+LSD++G N
Sbjct:  717 GSSSNISPEGSGGSSLLHCACEKADLGMVELLLQYGANVNASDSSGQTPLHCCLLRGKVTIARLLLTRGADPEAMNREGKTALDIAAESNFTDPEVLALLSDTNGYN 823          
BLAST of CX290848 vs. ExPASy Swiss-Prot
Match: AGD1_ARATH (ADP-ribosylation factor GTPase-activating protein AGD1 OS=Arabidopsis thaliana GN=AGD1 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 1
Query:  127 CTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAIESNFADSEILAILSDS 396
            C+LLHLAC SADIGM+ELLLQYGA INATDS+G TPLH CI+  +   A+LLL RG DP AV+++    ++ A +++  DSE++A+L+DS
Sbjct:  737 CSLLHLACLSADIGMVELLLQYGAKINATDSKGRTPLHHCIISRRYAIARLLLMRGGDPNAVDKDSNIPVKYASQTDLNDSELIALLTDS 826          
BLAST of CX290848 vs. ExPASy Swiss-Prot
Match: AGD2_ARATH (ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana GN=AGD2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 46/93 (49.46%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  118 LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAIESN-FADSEILAILSD 393
            L+GC+LLH+AC S D  +LELLLQ+GA+IN  D  G TPLH CI  G   FAK+LL RGA P   +  G + LE A+E     D E+  +L++
Sbjct:  682 LQGCSLLHVACQSGDPILLELLLQFGADINMRDYHGRTPLHHCIASGNNAFAKVLLRRGARPSIEDGGGLSVLERAMEMGAITDEELFLLLAE 774          
BLAST of CX290848 vs. ExPASy Swiss-Prot
Match: AGD4_ARATH (ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana GN=AGD4 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  118 LEGCTLLHLACDSADIGMLELLLQYGANINATDSRGLTPLHRCILRGKAMFAKLLLTRGADPRAVNREGKTSLELAIESN-FADSEILAILSD 393
            L+GC+LLH+AC   D  +LELLLQ+GA++N  D  G TPLH CI  G   FAK+LL RGA P   +  G + LE A+E     D E+  +L++
Sbjct:  681 LQGCSLLHVACHIGDSVLLELLLQFGADLNIRDYHGRTPLHHCISSGNHKFAKILLRRGARPSIEDDGGLSVLERAMEMGAITDEELFLLLAE 773          
The following BLAST results are available for this feature:
BLAST of CX290848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AGD3_ARATH4.411e-3362.62ADP-ribosylation factor GTPase-activating protein ... [more]
AGD1_ARATH8.338e-2457.78ADP-ribosylation factor GTPase-activating protein ... [more]
AGD2_ARATH7.559e-1749.46ADP-ribosylation factor GTPase-activating protein ... [more]
AGD4_ARATH4.899e-1647.31ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionC02027G12SK IF1 Citrus clementina cDNA clone C02027G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290848 ID=CX290848; Name=CX290848; organism=Citrus clementina; type=EST; length=686bp
GAGGAGCAGACAAGCCTTGAACGCAGCTCTAGTAGCTTAACAGGGAATTC
ATCAGACAGATCTTCCTCAGGCTCTCTAAACTTGGCTGGTACAAGTGAAG
GCCAGACCATGGATGATCTAGAGGGCTGCACCCTTCTCCATCTTGCTTGT
GATTCTGCTGATATTGGCATGTTAGAACTTCTGTTACAGTACGGTGCAAA
TATAAATGCAACTGATTCAAGAGGTCTGACCCCTCTTCACCGCTGTATCC
TTAGAGGCAAGGCCATGTTTGCAAAGTTGCTTCTTACTAGGGGAGCTGAT
CCACGGGCTGTAAATAGGGAAGGTAAAACTTCTCTTGAACTGGCAATAGA
GTCAAACTTTGCCGACAGTGAGATCCTCGCTATATTATCCGACTCGCATG
GGTAAAATCCCCTTGTCGAGAAGAGGAAGTTTTAAGGGAGAACTGCATTG
AAATTTCTTTTTGTATAGTAGTTATATTTATATTACTTGCATGAGAGGTA
GTTTTTGAGTGGAGGAAATAGCTATCGCAAGTGCTTGAAGGTTTTAGTGG
AGATGGGAGAGCGGCAGGTTGGCTTGCCTGCTCGCCTGGCCCCAGCCCCC
ATGACATGCCTGTGGGCATAAATGCAAAATCTTCACTTTGGGTTTAAGTT
AAATGAAATGGCTCTCCCATTGATATGAGTTGTGTT
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