CX290858

Overview
NameCX290858
Unique NameCX290858
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13807 contig Ccv1_Contig13807:598..1216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290858 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.058e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 280
            + LM    + PVN+GNP E T+LE A+ +K L+  G EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  310 VALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CX290858 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.058e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 280
            + LM    + PVN+GNP E T+LE A+ +K L+  G EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  310 VALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CX290858 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.058e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 280
            + LM    + PVN+GNP E T+LE A+ +K L+  G EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  310 VALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CX290858 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.058e-16
Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRLGVPKRN 280
            + LM    + PVN+GNP E T+LE A+ +K L+  G EI+ +    DDP++RKPDI KAK +LGWEP V L +GL      FR  L     N
Sbjct:  310 VALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401          
BLAST of CX290858 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.404e-15
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 2
Query:    5 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGLPLMEEDFRSRL 262
            + LM    + PVN+GNP E ++++ A  +K+L+  G EI  +    DDP++RKPDI KAK LLGWEP V L +GL      FR  L
Sbjct:  311 VALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396          
BLAST of CX290858 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.916e-14
Identity = 36/75 (48.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:    5 IRLMEGENTGPVNIGNPGEFTMLELAETVKELINPGIEIKMVENTPDDPRQRKPDISKAKELLGWEPKVKLRDGL 229
            + LM    + PVN+GNP E T+LE A+ +K L+     I+ +    DDP++R+PDI KAK LLGWEP V L +GL
Sbjct:  308 VSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGL 382          
The following BLAST results are available for this feature:
BLAST of CX290858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UXS1_RAT1.058e-1645.65UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.058e-1645.65UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.058e-1645.65UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.058e-1645.65UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_XENTR3.404e-1545.35UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_DANRE4.916e-1448.00UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
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Properties
Property NameValue
Genbank descriptionC02027H10SK IF1 Citrus clementina cDNA clone C02027H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290858 ID=CX290858; Name=CX290858; organism=Citrus clementina; type=EST; length=619bp
GAGGATTCGCCTCATGGAAGGAGAGAACACTGGCCCAGTCAACATTGGAA
ACCCAGGTGAATTTACAATGCTTGAGCTTGCTGAGACAGTGAAGGAGCTT
ATCAATCCTGGGATTGAGATAAAGATGGTTGAGAACACTCCTGATGATCC
ACGACAAAGAAAACCTGACATCTCAAAAGCAAAGGAATTGCTTGGATGGG
AGCCGAAAGTCAAGTTGCGGGATGGACTTCCTCTTATGGAAGAGGATTTC
CGATCAAGGCTTGGAGTTCCCAAAAGGAATTAATAAAAACAGCAAGAATT
ATATCGATACAGGGTGAACACTTGAGTCTTGGATTCTTTCCACCTAATGT
GGGAGTGCTTTAGAATTAGAAACACAAGTCCTGTGTTTGGGTTGGTGCTT
GCCCTTGCCTCTTTTCATTTTCACCGAGCATGCCATGCAAATAAACACTG
AGAAGAATGTTGCTTTTAATGTTATGGATTTACTTCAATTTTTGGCTTTC
ACAACCATTATATAGTTAACATATGTTTTTTCAGTACTGCAATGCCCCTA
TTTGTCCCAAATTTTGTTCTTAGTAAATCAATAAAATCTATATACATTCT
TTAAAAAAAAAAAAAAAAA
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