CX290864

Overview
NameCX290864
Unique NameCX290864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length266
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290864_ssr61 microsatellite CX290864_ssr61:61..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX290864 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.958e-23
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 WWWYHLRWVRRRKRGYGIGRDDDDSRWLERLRSHKLAQVSLVQKPLVKVKLADLMAASNSFCSENVIIPTRTGTTYKAMLSDGS 252
            +WW+ +R   R+K+GYG G+  DDS W+  LRSHKL QV+L QKP+VK+KL DLMAA+N+F S N+ + +RTG +YKA L DGS
Sbjct:  241 FWWFFIREGSRKKKGYGAGKSKDDSDWIGLLRSHKLVQVTLFQKPIVKIKLGDLMAATNNFSSGNIDVSSRTGVSYKADLPDGS 324          
BLAST of CX290864 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 44/85 (51.76%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    1 WWWYHLRWVRRRKR-GYGIGRDDDDSRWLERLRSHKLAQVSLVQKPLVKVKLADLMAASNSFCSENVIIPTRTGTTYKAMLSDGS 252
            +WW+ +R  R+    GYG G+  DDS W+  LRSHKL QV+L QKP+VK+KL DL+ A+N F S N+++ +R+G +YKA L DGS
Sbjct:  234 FWWFFIRDRRKMNNYGYGAGKCKDDSDWIGLLRSHKLVQVTLFQKPIVKIKLVDLIEATNGFDSGNIVVSSRSGVSYKADLPDGS 318          
The following BLAST results are available for this feature:
BLAST of CX290864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1719_ARATH2.958e-2357.14Probable inactive receptor kinase At1g27190 OS=Ara... [more]
Y1699_ARATH1.984e-1951.76Probable LRR receptor-like serine/threonine-protei... [more]
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Properties
Property NameValue
Genbank descriptionC03001A07Rv OF1 Citrus clementina cDNA clone C03001A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290864 ID=CX290864; Name=CX290864; organism=Citrus clementina; type=EST; length=266bp
TGGTGGTGGTACCATTTGAGATGGGTTAGGAGGAGGAAGAGAGGTTATGG
TATTGGAAGAGATGATGATGATAGCCGTTGGCTTGAAAGGTTGAGGTCTC
ACAAGCTTGCTCAAGTTTCATTGGTTCAAAAACCTCTTGTTAAGGTTAAA
TTAGCTGATTTAATGGCGGCTTCAAACAGCTTTTGTTCAGAAAATGTTAT
AATTCCGACTAGAACAGGGACCACCTATAAGGCCATGCTTTCTGATGGGT
CACGTACTTGCTGTCA
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