CX290876

Overview
NameCX290876
Unique NameCX290876
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9348 contig Ccv1_Contig9348:27..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290876 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 5.211e-29
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 3 
Query:   30 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 392
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX290876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN5.211e-2953.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionC03001B11Rv OF1 Citrus clementina cDNA clone C03001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290876 ID=CX290876; Name=CX290876; organism=Citrus clementina; type=EST; length=481bp
AAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGGGAC
GATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAA
AATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGT
CGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCA
CCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAA
CGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTA
TCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTT
TATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCACTGAGT
GGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGTCACCAACTCAC
CGGATGAGTTGCCTGTAGTCTGTAGATAGTG
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