CX290915

Overview
NameCX290915
Unique NameCX290915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length396
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2672 contig Ccv1_Contig2672:66..467. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290915 vs. ExPASy Swiss-Prot
Match: SKI17_ARATH (F-box protein SKIP17 OS=Arabidopsis thaliana GN=SKIP17 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.066e-17
Identity = 50/97 (51.55%), Postives = 68/97 (70.10%), Query Frame = 1
Query:  121 DNLLETLLNLADSPPSLSIDVSFERLLD----SAPGDED-QSHLIDRAIKVSSLLLESAKRSARKRASHHNFLAWPLPPDLTIKVFSMLDTQSLCHA 396
            D ++ + L+  DS P +SI  SF+R+LD    SA  DE  Q  L+DR ++++SLLL+S +R  RKRAS HN  +W LPP+LTIKVFSMLDT+S+  A
Sbjct:   23 DLIISSFLSFPDSSP-ISISNSFDRVLDRALASASADESVQDRLVDRTLELASLLLDSTRRCFRKRASVHNSNSWSLPPELTIKVFSMLDTKSMMQA 118          
BLAST of CX290915 vs. ExPASy Swiss-Prot
Match: FB219_ARATH (F-box protein At4g02760 OS=Arabidopsis thaliana GN=At4g02760 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.952e-15
Identity = 57/133 (42.86%), Postives = 78/133 (58.65%), Query Frame = 1
Query:   55 KRLC----SSSTSQNP---NITAKLNPS-MDNLLETLLNLADSPP---SLSIDVSFERLLDSA-------PGDE-DQSHLIDRAIKVSSLLLESAKRSARKRASHHNFLAWPLPPDLTIKVFSMLDTQSLCHA 396
            KR C     +S+ +NP    I    N S +D  + + L+L+D P     LSI  SF+R+LD+          DE DQ   +DR ++++SLL +S KR  RKRA+  N  +WPL P+LTIKVFSMLDT+SL  A
Sbjct:    7 KRPCLVPLGTSSIENPCSLPIAPDFNQSNIDLTISSFLSLSDLPLFSLPLSIGCSFDRVLDNVIPSIAGTSRDEFDQDRFLDRTLQLASLLYKSTKRCIRKRATLQNSTSWPLLPELTIKVFSMLDTKSLMQA 139          
The following BLAST results are available for this feature:
BLAST of CX290915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SKI17_ARATH1.066e-1751.55F-box protein SKIP17 OS=Arabidopsis thaliana GN=SK... [more]
FB219_ARATH4.952e-1542.86F-box protein At4g02760 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC03001F11Rv OF1 Citrus clementina cDNA clone C03001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290915 ID=CX290915; Name=CX290915; organism=Citrus clementina; type=EST; length=396bp
TCAACATCAGCATCAGCATCAGCATCATCTTCATCATCAACAACGTCAAT
GGCCAAGCGCCTTTGTTCTTCTTCAACCTCCCAAAACCCTAACATCACCG
CCAAACTTAATCCTTCAATGGACAATCTTCTAGAAACTCTTCTCAACCTG
GCCGACTCTCCTCCTTCTCTCTCCATCGACGTGTCCTTCGAGAGACTACT
CGACTCTGCCCCCGGCGATGAGGATCAGTCGCACCTCATCGATCGCGCCA
TCAAAGTAAGCTCTCTCCTTCTCGAATCCGCCAAACGCTCCGCCAGAAAA
CGCGCCTCGCATCACAATTTCCTTGCCTGGCCCCTACCTCCTGATCTCAC
CATCAAAGTGTTTTCTATGCTTGATACTCAAAGCTTGTGCCATGCG
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