CX290917

Overview
NameCX290917
Unique NameCX290917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290917 vs. ExPASy Swiss-Prot
Match: YG75_SCHPO (Uncharacterized membrane protein C776.05 OS=Schizosaccharomyces pombe GN=SPBC776.05 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.037e-15
Identity = 51/180 (28.33%), Postives = 98/180 (54.44%), Query Frame = 3
Query:    3 NTIFLVDLLLYPKNEKLFMVCFSFAEGPLAWAIIVWRCSLVFNSVDKIVSVLIHLLPGLVFFTIRWWNPETFAAMHPEGTSQRASWPYVEDKTYLLTWLFLVPLGA--YTLWQVLYFLIVNVLRRQRLLKDPEVMTSYRELSKKAQKANNLWWRLSSLLGDQNRMFMYITLQAIFTVATM 536
            N + LV + ++P++ +LF++ +S + G LAW+++ WR SL+F+S+DKI S+ IH  P LV  TI     +++          +  +P V  K   +  L  V + +  Y LWQ+ Y+  + V +++++ +     TS+  LSK +     L  R  + L    + F+++ +Q ++++ TM
Sbjct:  172 NILLLVYIWIFPESRRLFILSYSISYGTLAWSVVAWRNSLLFHSIDKITSLFIHFFPPLVLHTIVHLTNKSYL---------KDRFPAVL-KVKKIDLLSSVEIASFFYALWQIWYYFFIQVGKQKQIQEGRP--TSFTWLSKASYSKTKL-GRAVAKLPQNLQPFVFMIIQYLYSITTM 338          
BLAST of CX290917 vs. ExPASy Swiss-Prot
Match: YG3L_YEAST (Uncharacterized membrane protein YGR149W OS=Saccharomyces cerevisiae GN=YGR149W PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.449e-12
Identity = 56/190 (29.47%), Postives = 89/190 (46.84%), Query Frame = 3
Query:    3 NTIFLVDLLLYPKNEKLFMVCFSFAEGPLAWAIIVWRCSLVFNSVDKIVSVLIHLLPGLVFFTIRWWNPETFAAMHPEGTSQRASWPYVEDKTYLLTWLFLVPLGAYTLWQVLYFLIVNVLRRQRLLKDPEVMTSYRELSKKAQKANNLWWRLSSLLGDQNRMFMYITLQAIFTVATMSLTVPIFLSYEL 572
            N + L+ + ++P +  LF  CF+F  G L +A+I WR SLV +S+DK  S  IH++P  V + I    P  +      G   ++       K  L T L+      Y +WQ LY   +  L++   +K  E MTS+  L+    +  N W   +  L     M +Y   Q  + + TM L   I++ Y+L
Sbjct:  173 NMLCLLFIWIFPYSYSLFQSCFAFTFGTLCFAVITWRNSLVIHSIDKTTSCFIHIIPPCVMYVIYHGLPLEYKIERFPGAIIQSELDI--KKNILWTSLY------YLVWQSLYHYFI-TLKKSSKIKSGERMTSFEYLT--THQFKNFW---AVKLRSPWPMIIYTLSQYFYQLFTM-LLCGIWIRYKL 347          
The following BLAST results are available for this feature:
BLAST of CX290917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YG75_SCHPO4.037e-1528.33Uncharacterized membrane protein C776.05 OS=Schizo... [more]
YG3L_YEAST2.449e-1229.47Uncharacterized membrane protein YGR149W OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionC03001G01Rv OF1 Citrus clementina cDNA clone C03001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290917 ID=CX290917; Name=CX290917; organism=Citrus clementina; type=EST; length=590bp
CCAATACTATCTTTTTGGTTGACCTTCTTCTGTACCCGAAAAATGAGAAG
CTTTTCATGGTGTGCTTCTCATTTGCAGAGGGGCCATTAGCCTGGGCAAT
AATTGTTTGGCGTTGTAGCTTGGTTTTCAATTCCGTTGACAAAATTGTTA
GTGTCCTAATACATCTTTTACCAGGGTTAGTTTTTTTCACCATTCGTTGG
TGGAATCCAGAAACCTTTGCAGCCATGCATCCTGAAGGGACTTCTCAAAG
AGCTTCATGGCCTTATGTGGAAGACAAAACCTACCTTTTGACTTGGCTGT
TTCTGGTTCCCTTAGGAGCTTACACTCTATGGCAGGTTCTCTATTTCCTC
ATTGTCAATGTACTGCGTCGACAAAGGCTGTTAAAGGATCCTGAAGTCAT
GACCTCATACAGGGAGCTCTCCAAAAAGGCGCAGAAAGCTAACAATTTGT
GGTGGCGTTTAAGTAGTTTGCTTGGAGACCAGAATCGCATGTTCATGTAC
ATTACATTGCAAGCCATATTCACAGTTGCAACCATGTCACTCACTGTCCC
CATTTTTCTGTCATACGAGTTGCATGTTCTTTTTCAAATA
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