CX290918

Overview
NameCX290918
Unique NameCX290918
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length330
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_SCHPO (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.120e-13
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:   83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310
            S SL  Y+D+K+               SFDQFAN++L+   ERI V D+Y DI   +Y++RGENVVL+GELDL+KE
Sbjct:   13 SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGELDLDKE 88          
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.519e-11
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   80 LSTSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310
            +S+ L   +DKK+               +FDQFAN+VL+   ERI VGD Y D  L L+ IRG+NVV++GE+D +KE
Sbjct:    1 MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEIDPDKE 77          
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_MOUSE (U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 2
Query:   83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310
            + SL   +DKK                S DQFAN+VL    ERI VG  Y DIP  ++V+RGENVVL+GE+DLEKE
Sbjct:    7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKE 82          
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_HUMAN (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 2
Query:   83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310
            + SL   +DKK                S DQFAN+VL    ERI VG  Y DIP  ++V+RGENVVL+GE+DLEKE
Sbjct:    7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKE 82          
BLAST of CX290918 vs. ExPASy Swiss-Prot
Match: LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.984e-11
Identity = 37/76 (48.68%), Postives = 45/76 (59.21%), Query Frame = 2
Query:   83 STSLATYLDKKIXXXXXXXXXXXXXXXSFDQFANVVLEGACERIIVGDLYCDIPLSLYVIRGENVVLIGELDLEKE 310
            + SL   +DKK                S DQFAN+VL    ERI VG  Y DIP  ++V+RGENVVL+GE+DLEKE
Sbjct:    7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKE 82          
The following BLAST results are available for this feature:
BLAST of CX290918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM1_SCHPO2.120e-1348.68U6 snRNA-associated Sm-like protein LSm1 OS=Schizo... [more]
LSM1_DICDI1.519e-1144.16Probable U6 snRNA-associated Sm-like protein LSm1 ... [more]
LSM1_MOUSE1.984e-1148.68U6 snRNA-associated Sm-like protein LSm1 OS=Mus mu... [more]
LSM1_HUMAN1.984e-1148.68U6 snRNA-associated Sm-like protein LSm1 OS=Homo s... [more]
LSM1_BOVIN1.984e-1148.68U6 snRNA-associated Sm-like protein LSm1 OS=Bos ta... [more]
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Properties
Property NameValue
Genbank descriptionC03001G02Rv OF1 Citrus clementina cDNA clone C03001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290918 ID=CX290918; Name=CX290918; organism=Citrus clementina; type=EST; length=330bp
GAAGGAGAATTATTATTTGTAAAAGTCAATAACATCTCTGAATTCCTCAA
TGTCGTGGGCTGGCCCTGATGATGTCTTTCTCTCCACTTCTCTCGCCACC
TATCTCGACAAAAAAATTCTCGTCCTGTTGCGAGATGGGCGGAAGCTCTT
GGGTTTGCTCCGTTCATTTGATCAATTTGCTAATGTTGTTCTTGAAGGTG
CTTGTGAGCGAATCATTGTGGGTGATCTTTACTGTGATATCCCCTTAAGT
CTATACGTAATCCGTGGGGAGAATGTTGTCTTAATTGGAGAGCTGGATTT
AGAGAAGGAGGAGCTACCTGCACATATGAC
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