CX290922

Overview
NameCX290922
Unique NameCX290922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290922 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.231e-27
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   33 KVDRRSTSGYC-SFVGGNLVTWRSKKQNVVARSSAEAEFRAVAHGICEIMWIRRLLEELKATKSSPM*LYYDNKAAISIAHNPVLHDRTKHVEIDKHFIKEKIDNGLVHMEHIPTGEQVADVFTKGLHTKQFNFLVGKLAM 452
            ++DR+ST+GY       NL+ W +K+QN VA SS EAE+ A+   + E +W++ LL  +     +P+ +Y DN+  ISIA+NP  H R KH++I  HF +E++ N ++ +E+IPT  Q+AD+FTK L   +F  L  KL +
Sbjct: 1260 EIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400          
BLAST of CX290922 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 44/129 (34.11%), Postives = 79/129 (61.24%), Query Frame = 3
Query:   39 DRRSTSGYCSFVGGNLVTWRSKKQNVVARSSAEAEFRAVAHGICEIMWIRRLLEELKATKSSPM*LYYDNKAAISIAHNPVLHDRTKHVEIDKHFIKEKIDNGLVHMEHIPTGEQVADVFTKGLHTKQF 425
            +R+S++GY     G  ++W+SK Q  VA S+ EAE+ A      E++W++R L+EL   +   + +Y D+++AI ++ N + H RTKH+++  H+I+E +D+  + +  I T E  AD+ TK +   +F
Sbjct: 1189 NRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKF 1316          
The following BLAST results are available for this feature:
BLAST of CX290922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
COPIA_DROME3.231e-2741.13Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
POLX_TOBAC3.031e-1734.11Retrovirus-related Pol polyprotein from transposon... [more]
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Properties
Property NameValue
Genbank descriptionC03001G06Rv OF1 Citrus clementina cDNA clone C03001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290922 ID=CX290922; Name=CX290922; organism=Citrus clementina; type=EST; length=505bp
CTTGTAAGAGCCTTTGCAGTAAATTTACCTGCAAAGTAGACCGAAGATCC
ACTTCTGGATACTGTTCATTTGTAGGTGGTAATTTGGTTACTTGGAGAAG
CAAGAAACAGAATGTGGTAGCTAGGAGCAGTGCTGAGGCTGAATTTAGAG
CTGTAGCCCATGGCATTTGTGAGATCATGTGGATTAGGAGGCTGTTGGAA
GAGTTAAAAGCGACAAAATCATCTCCTATGTAGTTGTACTATGACAACAA
GGCAGCAATCTCAATAGCACACAATCCAGTCCTTCATGACCGCACAAAAC
ATGTGGAGATTGACAAGCATTTCATCAAGGAGAAGATAGATAATGGATTG
GTTCATATGGAGCACATTCCTACTGGAGAACAAGTGGCTGATGTCTTTAC
CAAAGGACTACACACAAAACAGTTCAATTTTCTAGTTGGCAAGCTGGCTA
TGGAGGATATTCTTAAACCAGCTTGAGGGGGAGTGTTAGAAAATTAGAAA
AAATA
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