CX290923

Overview
NameCX290923
Unique NameCX290923
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:1..344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.657e-26
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEF----GRTDTKREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTP-QYPCANGKFY 343
            +VA +VT  FF+GIKNQA + CEGK FYTR AF+SA+  YP F     +   KRE+AAFFAH THET  FC++ EI+K+N YC PT  Q+PCA G+ Y
Sbjct:   68 NVASVVTSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKY 165          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.064e-25
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTDFCFVEEISKTNPYC-TPTPQYPCANGKFY 343
            +VA++VT  FF+GIKNQA + CEGK FYTR AF+SA+++YP F    T    KRE+AAFFAHVTHET  FC++ EI+K+N YC     Q+PCA G+ Y
Sbjct:   79 NVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKY 176          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.219e-23
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEI-SKTNPYCTPT-PQYPCANGKFY 343
            SVA +VTPEFF  +  QA   C  KGFYTRDAF++A   YP FGRT    D+KRE+AAFFAH  HET  FC++EEI   +  YC  T  Q+PC  GK Y
Sbjct:   67 SVASIVTPEFFAALVAQADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDETSTQWPCMAGKGY 165          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.456e-23
Identity = 52/98 (53.06%), Postives = 65/98 (66.33%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEE-ISKTNPYCTPTPQYPCANGKFY 343
            +V+D+VT EF+DGI +QA A C GK FYTR  F+ A+S+YP FG      D KRE+AA+FAHVTHET   C++EE     N YC  + QYPC   K Y
Sbjct:   45 TVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEY 142          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.204e-22
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   62 NSVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEI-SKTNPYC--TPTPQYPCANGKFY 343
            N  AD++T +F +GI +QA + C GK FYTRDAF+SAL+SY +FGR     D+KRE+AA FAH THET  FC++EEI   +  YC      QYPC++ K Y
Sbjct:   66 NVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGY 166          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.185e-22
Identity = 50/95 (52.63%), Postives = 64/95 (67.37%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTP-TPQYPCANGKFY 343
            SV  +VT  FF+GI NQA   C GK FYTRD+FI+A +++P F  + T+RE+A  FAH THET  FC++EEI+  +  YC     QYPCA GK Y
Sbjct:   71 SVGSIVTQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGY 165          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.627e-21
Identity = 52/99 (52.53%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFG----RTDTKREVAAFFAHVTHETTDFCFVEEISKTN-PYCTPT-PQYPCANGKFY 343
            SV  +VT  FF+GIKNQAP  C GK FYTR +F++A  SY  F       D+KRE+AAFFAHVTHET   C++ EI+  N  YC  +  Q+PC  GK Y
Sbjct:   83 SVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKY 181          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.043e-21
Identity = 52/99 (52.53%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   65 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEEISKTN-PYCTP-TPQYPCANGKFY 343
            SV  +VT  FF+GIKNQAP  C GK FYTR +F++A  SY  F R     D+KRE+AAFFAHVTHET   C++ EI+  +  YC     Q+PC  GK Y
Sbjct:   86 SVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKY 184          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.758e-20
Identity = 53/102 (51.96%), Postives = 67/102 (65.69%), Query Frame = 2
Query:   62 NSVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTDFCFVEEISKT--NPYC--TPTPQYPCANGKFY 343
            +SV+D+V+  FFDGI  QA A+C GK FYTR AF+SA+   P+FG      D KRE+AAFFAH++HETT+ C +EE      + YC      QYPCA GK Y
Sbjct:   85 SSVSDIVSQAFFDGIIGQAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKY 184          
BLAST of CX290923 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.431e-16
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 2
Query:   68 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFY 343
            V+ +V+   FD  + ++    C+ KGFYT DAF++A  ++P FG T +    KREVAAF A  +HETT              +CF +E   T+ YCTP+ Q+PCA GK Y
Sbjct:   80 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSY 189          
The following BLAST results are available for this feature:
BLAST of CX290923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CHIB_MAIZE3.657e-2657.14Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE1.064e-2557.14Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI6_ORYSJ2.219e-2355.56Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA6.456e-2353.06Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU3.204e-2252.48Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_BRANA4.185e-2252.63Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI4_ORYSJ4.627e-2152.53Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ6.043e-2152.53Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU1.758e-2051.96Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIA_SECCE3.431e-1640.91Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]

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Properties
Property NameValue
Genbank descriptionC03001G07Rv OF1 Citrus clementina cDNA clone C03001G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290923 ID=CX290923; Name=CX290923; organism=Citrus clementina; type=EST; length=344bp
TCTTTTCCTGGGGTTACTTCTACTTGCCTTAGCCAACATTCCCAGAAATG
TAGTGTGTCAAAACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGAC
GGCATTAAGAATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATAC
AAGAGATGCATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAA
CTGATACTAAGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAA
ACAACAGATTTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTG
TACACCGACTCCTCAATATCCATGTGCCAATGGTAAATTCTACT
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