CX290934

Overview
NameCX290934
Unique NameCX290934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO1_MOUSE (Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.533e-39
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    7 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK  V++   DGV D GLTL GFLFLH LF
Sbjct:  139 SSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHLSDGVADSGLTLRGFLFLHTLF 271          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO1_HUMAN (Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.533e-39
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    7 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK  V++   DGV D GLTL GFLFLH LF
Sbjct:  126 SSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADSGLTLKGFLFLHTLF 258          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO1_DANRE (Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rhot1a PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.456e-38
Identity = 77/134 (57.46%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    7 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LND ELN FQ  CFN PL P  +  VK  V++   DGV D GLTL GFLFLH LF
Sbjct:  126 SSMETIL-PIMNQYSEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYSPEEKEMKPSCIKALTRIFKISDLDNDGILNDNELNFFQRTCFNIPLAPQALEDVKNVVRKNMTDGVKDNGLTLKGFLFLHTLF 258          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO1_BOVIN (Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.456e-38
Identity = 78/134 (58.21%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    7 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +S+E ++ PIM Q+ EIETCVECSA  +  + ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK  V++   DGV D GLTL GFLFLH LF
Sbjct:  139 SSMETIL-PIMNQYTEIETCVECSAKNLKNISELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFKISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKHISDGVADGGLTLKGFLFLHTLF 271          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO1_CHICK (Mitochondrial Rho GTPase 1 OS=Gallus gallus GN=RHOT1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.243e-38
Identity = 78/134 (58.21%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    7 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +S+E ++ PIM Q+ EIETCVECSA  +    ++FYYAQKAVLHPT PL+  +E+ +KP C++AL RIF I D D DG LNDAELN FQ  CFN PL P  +  VK  V++   DGV D GLTL GFLFLH LF
Sbjct:  126 SSMETIL-PIMNQYTEIETCVECSAKNLKNRSELFYYAQKAVLHPTGPLYCPEEKEMKPACIKALTRIFRISDQDNDGTLNDAELNFFQRICFNTPLAPQALEDVKNVVRKNVSDGVADNGLTLKGFLFLHTLF 258          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO2_DANRE (Mitochondrial Rho GTPase 2 OS=Danio rerio GN=rhot2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.609e-37
Identity = 78/136 (57.35%), Postives = 97/136 (71.32%), Query Frame = 1
Query:    1 NATSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            + +S+E ++ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +++ LK +CVRAL RIF I D D D  L+DAELN FQ  CF  PL P  +  VK  V +   DGV D GLTL+GFLFL+ LF
Sbjct:  124 SGSSMETIL-PIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEDKQLKAQCVRALSRIFSISDQDNDHILSDAELNCFQKLCFGNPLAPQALEDVKTVVWKNTSDGVQDNGLTLNGFLFLNTLF 258          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO2_XENTR (Mitochondrial Rho GTPase 2 OS=Xenopus tropicalis GN=rhot2 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.043e-36
Identity = 75/134 (55.97%), Postives = 96/134 (71.64%), Query Frame = 1
Query:    7 TSLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            +S+E ++ PIM QF EIETCVECSA  +  + +VFYYAQKAVLHPTAPL+D +E+ L+P+C +AL RIF I + D +  L+D ELN FQ  CF  PL P  +  VK  V++   DGV D GLTL+GFLFL+ LF
Sbjct:  126 SSMESIL-PIMNQFSEIETCVECSAKNLKNISEVFYYAQKAVLHPTAPLYDPEEKQLRPQCKKALTRIFTISEQDNNQILSDEELNFFQQSCFGNPLAPQALEDVKMVVKKNTADGVRDNGLTLNGFLFLNTLF 258          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO2_CHICK (Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.035e-36
Identity = 75/130 (57.69%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   19 EVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            EV+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D +E+ L+P C RAL RIF + D D +  L+D ELN FQ  CF  PL P  +  VK  V +   DGV D GLTL+GFLFL+ LF
Sbjct:  129 EVILPIMNQFSEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEEKQLRPACSRALTRIFNLSDQDNNQILSDDELNYFQKSCFGNPLAPQALEDVKMVVWKNTTDGVQDNGLTLNGFLFLNTLF 258          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO2_BOVIN (Mitochondrial Rho GTPase 2 OS=Bos taurus GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.967e-35
Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 1
Query:   10 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            S+E V+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D + + L+P C +AL RIF + D DMD AL+D ELN FQ  CF  PL P  +  VK  V +    GV D  LTL GFLFL+ LF
Sbjct:  127 SMEAVL-PIMSQFPEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDMDQALSDQELNAFQTSCFGHPLAPQALEDVKMVVSKNVVGGVRDDQLTLDGFLFLNTLF 258          
BLAST of CX290934 vs. ExPASy Swiss-Prot
Match: MIRO2_PIG (Mitochondrial Rho GTPase 2 OS=Sus scrofa GN=RHOT2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.724e-35
Identity = 75/133 (56.39%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   10 SLEEVMGPIMQQFREIETCVECSATTMIQVPDVFYYAQKAVLHPTAPLFDHDEQTLKPRCVRALKRIFIICDHDMDGALNDAELNEFQVKCFNAPLQPAEIVSVKRFVQEKQHDGVNDLGLTLSGFLFLHALF 408
            S+E V+ PIM QF EIETCVECSA  +  + ++FYYAQKAVLHPTAPL+D + + L+P C +AL RIF + D DMD AL+D ELN FQ  CF  PL P  +  VK  V      GV D  LTL GFLFL+ LF
Sbjct:  127 SMEAVL-PIMSQFPEIETCVECSAKNLKNISELFYYAQKAVLHPTAPLYDPEAKQLRPACAQALTRIFRLSDQDMDQALSDQELNAFQTCCFGHPLAPQALEDVKLVVSRNVAGGVQDDRLTLDGFLFLNTLF 258          
The following BLAST results are available for this feature:
BLAST of CX290934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
MIRO1_MOUSE8.533e-3958.21Mitochondrial Rho GTPase 1 OS=Mus musculus GN=Rhot... [more]
MIRO1_HUMAN8.533e-3958.21Mitochondrial Rho GTPase 1 OS=Homo sapiens GN=RHOT... [more]
MIRO1_DANRE1.456e-3857.46Mitochondrial Rho GTPase 1-A OS=Danio rerio GN=rho... [more]
MIRO1_BOVIN1.456e-3858.21Mitochondrial Rho GTPase 1 OS=Bos taurus GN=RHOT1 ... [more]
MIRO1_CHICK3.243e-3858.21Mitochondrial Rho GTPase 1 OS=Gallus gallus GN=RHO... [more]
MIRO2_DANRE1.609e-3757.35Mitochondrial Rho GTPase 2 OS=Danio rerio GN=rhot2... [more]
MIRO2_XENTR1.043e-3655.97Mitochondrial Rho GTPase 2 OS=Xenopus tropicalis G... [more]
MIRO2_CHICK3.035e-3657.69Mitochondrial Rho GTPase 2 OS=Gallus gallus GN=RHO... [more]
MIRO2_BOVIN1.967e-3556.39Mitochondrial Rho GTPase 2 OS=Bos taurus GN=RHOT2 ... [more]
MIRO2_PIG5.724e-3556.39Mitochondrial Rho GTPase 2 OS=Sus scrofa GN=RHOT2 ... [more]

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Properties
Property NameValue
Genbank descriptionC03001H10Rv OF1 Citrus clementina cDNA clone C03001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290934 ID=CX290934; Name=CX290934; organism=Citrus clementina; type=EST; length=410bp
AATGCCACAAGCCTCGAGGAGGTTATGGGACCAATCATGCAACAGTTCAG
GGAGATTGAAACTTGTGTAGAATGTTCTGCAACTACTATGATTCAGGTCC
CTGATGTTTTCTATTATGCTCAAAAAGCAGTACTTCATCCAACAGCTCCA
TTGTTTGATCACGATGAACAAACTTTGAAACCTCGGTGCGTCAGGGCATT
GAAAAGGATATTTATTATCTGTGATCATGACATGGACGGTGCCCTAAATG
ATGCAGAGTTAAATGAGTTTCAGGTTAAATGTTTTAATGCTCCATTACAG
CCTGCTGAAATAGTAAGCGTAAAGAGGTTTGTACAAGAGAAGCAGCATGA
TGGAGTCAATGACCTTGGTCTTACCCTTAGTGGTTTCCTTTTCCTCCATG
CTCTTTTCAT
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