CX290962

Overview
NameCX290962
Unique NameCX290962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9434 contig Ccv1_Contig9434:33..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290962 vs. ExPASy Swiss-Prot
Match: ABA2_PRUAR (Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.014e-50
Identity = 111/204 (54.41%), Postives = 143/204 (70.10%), Query Frame = 1
Query:   16 MVSSMFYNSVNLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGT-SGQSKNPTQMKAAVA---ESPTNNSDSENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKV*YFHSCSRKRDCQSQE*LARMTLQQILAKS 615
            M S++FYNS+NLS AVFSRTHFP+P+ K   +EFS   H  +Y  R+ T SGQ K  T+++A VA   E P+  + ++ KK                   K+KGF+V+VFEKD+SA+RGEGQYRGPIQIQSNALAALEAID+DVAEEVMR GCVTGDRINGLVDG+SG+WY+K   F + + +R       ++R+ LQQILA++
Sbjct:    1 MASTLFYNSMNLSAAVFSRTHFPIPINKDFPLEFSPCIHT-DYHLRSRTRSGQKKCLTEVRATVASPTEVPSAPASTQPKKLRILVAGGGIGGLVFALAAKKKGFDVVVFEKDLSAVRGEGQYRGPIQIQSNALAALEAIDMDVAEEVMRVGCVTGDRINGLVDGVSGTWYVKFDTF-TPAVERGLPVTRVISRIALQQILARA 202          
BLAST of CX290962 vs. ExPASy Swiss-Prot
Match: ABA2_SOLLC (Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.026e-38
Identity = 99/211 (46.92%), Postives = 129/211 (61.14%), Query Frame = 1
Query:   16 MVSSMFYNSVNLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESP---TNNSDS--------ENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKV*YFHSCSRKRDCQSQE*LARMTLQQILAKS 615
            M S++FY SV+ ST+V SR   P+ + K    E      C + +   G   + K   ++KA +AE+P   T  +DS          KK                   K++GF+VLVFE+D+SAIRGEGQYRGPIQIQSNALAALEAIDLDVAE++M AGC+TG RINGLVDGISG+WY K   F + + +R       ++RMTLQQILA++
Sbjct:    1 MYSTVFYTSVHPSTSVLSRKQLPLLISKDFSAELYHSLPCRSLE--NGHINKVKG-VKVKATIAEAPVTPTEKTDSGANGDLKVPQKKLKVLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEDIMNAGCITGQRINGLVDGISGNWYCKFDTF-TPAVERGLPVTRVISRMTLQQILARA 207          
BLAST of CX290962 vs. ExPASy Swiss-Prot
Match: ABA2_NICPL (Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.313e-37
Identity = 96/206 (46.60%), Postives = 126/206 (61.17%), Query Frame = 1
Query:   16 MVSSMFYNSVNLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQM-KAAVAESP-----TNNSDSENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKV*YFHSCSRKRDCQSQE*LARMTLQQILAKS 615
            M S++FY SV+ ST+ FSR   P+ + K    E      C     R+  +GQ K    + KA +AE+P     T+      KK                   K++GF+VLVFE+D+SAIRGEGQYRGPIQIQSNALAALEAID+DVAE++M AGC+TG RINGLVDG+SG+WY K   F + + +R       ++RMTLQQ LA++
Sbjct:    1 MYSTVFYTSVHPSTSAFSRKQLPLLISKDFPTELYHSLPCS----RSLENGQIKKVKGVVKATIAEAPATIPPTDLKKVPQKKLKVLVAGGGIGGLVFALAAKKRGFDVLVFERDLSAIRGEGQYRGPIQIQSNALAALEAIDMDVAEDIMNAGCITGQRINGLVDGVSGNWYCKFDTF-TPAVERGLPVTRVISRMTLQQNLARA 201          
BLAST of CX290962 vs. ExPASy Swiss-Prot
Match: ABA2_CAPAN (Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 83/155 (53.55%), Postives = 104/155 (67.10%), Query Frame = 1
Query:  163 SGQSKNPTQMKAAVAESPT-----NNSDSENKKXXXXXXXXXXXXXXXXXXXKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKV*YFHSCSRKRDCQSQE*LARMTLQQILAK 612
            +G  K    +KA +AE+P      +NS+   KK                   K++GF+VLVFE+D+SAIRGEGQYRGPIQIQSNALAALEAID+DVAEE+M AGC+TG RINGLVDGISG+WY K   F + + +R       ++RMTLQQILA+
Sbjct:   45 NGHIKKVKGVKATLAEAPATPTEKSNSEVPQKKLKVLVAGGGIGGLVFALAGKKRGFDVLVFERDISAIRGEGQYRGPIQIQSNALAALEAIDMDVAEEIMNAGCITGQRINGLVDGISGNWYCKFDTF-TPAVERGLPVTRVISRMTLQQILAR 198          
The following BLAST results are available for this feature:
BLAST of CX290962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ABA2_PRUAR3.014e-5054.41Zeaxanthin epoxidase, chloroplastic OS=Prunus arme... [more]
ABA2_SOLLC2.026e-3846.92Zeaxanthin epoxidase, chloroplastic OS=Solanum lyc... [more]
ABA2_NICPL1.313e-3746.60Zeaxanthin epoxidase, chloroplastic OS=Nicotiana p... [more]
ABA2_CAPAN2.739e-3553.55Zeaxanthin epoxidase, chloroplastic OS=Capsicum an... [more]
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Properties
Property NameValue
Genbank descriptionC03002C06Rv OF1 Citrus clementina cDNA clone C03002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290962 ID=CX290962; Name=CX290962; organism=Citrus clementina; type=EST; length=681bp
CGTTGGAGAAACAAGATGGTTTCATCTATGTTCTACAATTCAGTCAATCT
TTCAACAGCTGTTTTCTCAAGAACCCACTTCCCAGTTCCTGTATACAAAC
ATTCTTGCATTGAATTTTCACGTTATGATCACTGTATTAACTACAAATTC
AGGACCGGAACAAGTGGGCAAAGCAAGAACCCGACACAAATGAAAGCTGC
AGTGGCAGAGTCCCCTACTAATAACAGTGACAGTGAAAACAAGAAATTGA
GGATTTTGGTGGCTGGTGGTGGGATTGGAGGACTTGTATTTGCTTTGGCT
GCTAAAAGGAAAGGATTTGAAGTGCTGGTGTTTGAGAAAGATATGAGTGC
TATAAGAGGTGAGGGACAATACAGAGGTCCAATTCAGATACAAAGCAATG
CATTGGCTGCTTTGGAAGCTATTGATTTGGATGTTGCTGAGGAAGTTATG
AGAGCTGGATGTGTTACCGGTGATAGAATTAATGGTTTGGTTGATGGGAT
TTCTGGTTCTTGGTACATCAAAGTTTGATACTTTCACTCCTGCAGCAGAA
AAAGGGACTGCCAGTCACAAGAGTAATTAGCCCGAATGACTTTGCAACAA
ATACTAGCTAAAAGCGGGTGGGGGATGAAATCATTTTGAATGAAAGTAAT
GGTATTTGATTTTTAAGGATCATGGGAGATA
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