CX290975

Overview
NameCX290975
Unique NameCX290975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14660 contig Ccv1_Contig14660:36..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290975 vs. ExPASy Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.187e-29
Identity = 71/139 (51.08%), Postives = 87/139 (62.59%), Query Frame = 1 
Query:   88 SLHAQQQRQSSLFCTKNITCSLKKH-NPQLLNPSLQVPRSWFAHAQQGXXXXXXXXXXXXXXXXYTNGNALASEFDVLTEGPPKDSYLVDDARVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQV 501
            SLH  +    SL  +K  T S  KH + +   P     R+W   A+QG                   G ALASEF++L +GPPK++Y+VDDA V+S+VTKSDLK+LLSDLE RK   +NFITVRKLTSKADAFEYADQV
Sbjct:   20 SLHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKPE---SRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQV 151

HSP 2 Score: 28.1054 bits (61), Expect = 8.187e-29
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3 
Query:    6 METILSSPSISPFLNPKP 59
            MET+LS  ++SP LNPKP
Sbjct:    1 METLLSPRALSPPLNPKP 18
[Close]
BLAST of CX290975 vs. ExPASy Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:  292 ALASEFDVLTEGPPKDSYLVDDARVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQV 501
            A+ASEFDVL  GPP+D+Y+VDDA V+S+VTKSD+K+L+ DLESRKN  INFITVRKLTSKADAFEYADQV
Sbjct:   96 AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQV 165
[Close]
BLAST of CX290975 vs. ExPASy Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 55/70 (78.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:  292 ALASEFDVLTEGPPKDSYLVDDARVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTSKADAFEYADQV 501
            A+ASEFDVL  GPP+D+Y+VDDA V+S+VTKSD+K+L+ DLESRKN  INFITVRKLTSKADAFEYADQV
Sbjct:   96 AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQV 165
The following BLAST results are available for this feature:
BLAST of CX290975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U603_ARATH8.187e-2951.08UPF0603 protein At1g54780, chloroplastic OS=Arabid... [more]
U603_ORYSJ1.149e-2478.57UPF0603 protein Os05g0401100, chloroplastic OS=Ory... [more]
U603_ORYSI1.149e-2478.57UPF0603 protein OsI_019212, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC03002D07Rv OF1 Citrus clementina cDNA clone C03002D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290975 ID=CX290975; Name=CX290975; organism=Citrus clementina; type=EST; length=501bp
CAGCCATGGAAACCATTCTCTCTTCTCCTTCAATCTCTCCATTTCTCAAC
CCAAAACCTTCTTCTTCGAAGACCCTATTTCTCACCTTCTCTACATGCGC
AGCAGCAAAGACAAAGTTCTCTTTTTTGCACCAAAAACATCACTTGTAGC
CTCAAAAAACACAACCCTCAGTTACTAAATCCATCTTTACAGGTACCCAG
AAGCTGGTTTGCTCATGCACAGCAAGGGCTGGCAGCTCTGGCTCTCTCTT
TGGCACTCAGTTTTAGCCCATTACTGTACACTAATGGCAATGCACTTGCT
TCTGAGTTTGATGTGCTCACTGAAGGCCCCCCAAAAGATTCCTATTTGGT
TGATGATGCACGTGTGATTAGTAAAGTTACAAAATCTGATTTGAAGCAGC
TTTTGTCAGATTTGGAGTCGAGGAAGAACTTCCACATTAACTTCATCACT
GTTAGGAAGCTCACTAGCAAAGCTGATGCTTTTGAGTATGCTGACCAAGT
A
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