CX290976

Overview
NameCX290976
Unique NameCX290976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length362
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4950 contig Ccv1_Contig4950:1..353. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290976 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.476e-19
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 3 
Query:   99 MSTVTLSAPCMVKAAPRNQLSRNLIKSPT---SLGSVKGISKTFGLKCSPNFQASM--AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEARVD 362
            M+TV +S+  M KA  R+Q +  LI + +   S+GS K +S++FGLKCS N   +   AVYK+KL+GP G+E EFE Q+DQYILDAAEEA VD
Sbjct:    1 MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVD 93
[Close]
BLAST of CX290976 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 3 
Query:   99 MSTVTLSAPCMVKAAPRN-QLSRNLIKSPTSLGSVKGISKTFGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEARVD 362
            MST T +  C +    R  Q S+  +KSP+SL     ++K   LK S     S MAVYK+KL+GP+GEEHEF+A +D YILDAAE A V+
Sbjct:    1 MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVE 90
The following BLAST results are available for this feature:
BLAST of CX290976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FER3_ARATH7.476e-1953.76Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE6.550e-1548.89Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
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Properties
Property NameValue
Genbank descriptionC03002D09Rv OF1 Citrus clementina cDNA clone C03002D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290976 ID=CX290976; Name=CX290976; organism=Citrus clementina; type=EST; length=362bp
TGCCGAATTCGGCACGAGATTTCACTTGACCGCCACCCACCAACCCACTC
GCCACCTCGCGCGCTCCGCCGCTCGATCTCTTGCTTTTCTGGGTAAAGAT
GTCGACTGTGACACTTAGCGCCCCGTGCATGGTTAAAGCTGCACCCAGAA
ATCAACTATCAAGGAACTTAATCAAGAGCCCAACCTCACTTGGATCTGTT
AAGGGCATCTCCAAGACCTTTGGCCTGAAATGCTCTCCCAATTTCCAAGC
ATCAATGGCTGTCTACAAGATTAAGCTGATTGGACCTAAGGGTGAAGAGC
ATGAGTTTGAGGCCCAGGAAGACCAGTACATCCTCGATGCAGCTGAGGAA
GCACGAGTCGAC
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