CX290978

Overview
NameCX290978
Unique NameCX290978
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length295
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15129 contig Ccv1_Contig15129:223..517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.461e-46
Identity = 85/98 (86.73%), Postives = 90/98 (91.84%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMKIGDLKGLFGLL 295
            FAPV DETPP KDL V GHLPDCLNGEFVRVGPNPKF+P AGYHWFDGDGMIHGLRIKDGKA+YVSRFV+TSR KQEE+F G+K MKIGDLKGLFGLL
Sbjct:   52 FAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLL 149          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.597e-45
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMKIGDLKGLFGLL 295
            F PV  ETPPTKDL V GHLPDCLNGEFVRVGPNPKFAP AGYHWFDGDGMIHGLRIKDGKATYVSRFV TSR+KQEE+FG +K MKIGDLKGLFGLL
Sbjct:   55 FGPVT-ETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLL 151          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.861e-44
Identity = 81/98 (82.65%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMKIGDLKGLFGLL 295
            FAP+ DETPP KDL V G LP+CLNGEFVRVGPNPKF   AGYHWFDGDGMIHG+RIKDGKATYVSR+V+TSR+KQEEFFG AK MKIGDLKG FGLL
Sbjct:   52 FAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLL 149          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.367e-43
Identity = 79/97 (81.44%), Postives = 85/97 (87.63%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMKIGDLKGLFGL 292
            FAPV DETPP  DL V GHLP+CLNGEFVRVGPNPKF P AGYHWFDGDGMIHG+RIKDGKATY SR+V+TSR+KQEE+F G K MKIGDLKG FGL
Sbjct:   56 FAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGL 152          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.749e-18
Identity = 44/98 (44.90%), Postives = 65/98 (66.33%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMK-IGDLKGLFGL 292
            ++PVP E+   ++L V G +PDC++G ++R G NP F P AG+H FDGDGM+H ++I +G A+Y  RF +T R+ QE+  G     K IG+L G  G+
Sbjct:  110 YSPVP-ESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGI 206          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMK-IGDLKGLFGL 292
            FAPVP+     + L V+G +P C++G +VR G NP + P AG+H+FDGDGM+H ++  +G A+Y  RF  T R+ QE+  G     K IG+L G  G+
Sbjct:  146 FAPVPEHAAD-QALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGI 242          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.425e-17
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFG 244
            FAPV DE PPT    + G LP  LNG ++R GPNP+F P   YH FDGDGM+H ++I +GKAT  SR+V+T +   E+  G
Sbjct:  115 FAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTG 195          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.430e-17
Identity = 43/98 (43.88%), Postives = 64/98 (65.31%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMK-IGDLKGLFGL 292
            +APVP+++  +  L V G +PDC++G ++R G NP F P +G+H FDGDGM+H ++I +G A+Y  RF  T R+ QE+  G     K IG+L G  G+
Sbjct:  117 YAPVPEQSVKSS-LSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGI 213          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.413e-17
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKA-TYVSRFVRTSRVKQEEFFGGAKAMK-IGDLKGLFGL 292
            FAPV  E PP  +L V G +P  ++G + R G NP F P AG+H FDGDGM+H LRI++G A +Y  RF  T+R++QE   G     K IG+L G  G+
Sbjct:  127 FAPV-GERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGI 224          
BLAST of CX290978 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.070e-17
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 2
Query:    2 FAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPAAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRVKQEEFFGGAKAMK-IGDLKGLFGL 292
            FAPV +E P  ++L V+G LPD + G +VR G NP   P  G+H+FDGDGM+H ++ + G A+Y  RF +T+R  QE   G     K IG+L G  G+
Sbjct:  127 FAPV-NEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGI 223          
The following BLAST results are available for this feature:
BLAST of CX290978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD1_PEA1.461e-4686.73Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PHAVU3.597e-4587.76Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH8.861e-4482.65Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA3.367e-4381.44Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED2_ARATH3.749e-1844.909-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED1_PHAVU1.425e-1743.889-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
CCD4_ARATH1.425e-1751.85Probable carotenoid cleavage dioxygenase 4, chloro... [more]
NCED5_ARATH2.430e-1743.88Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_MAIZE5.413e-1747.479-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED3_ARATH7.070e-1744.909-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionC03002D11Rv OF1 Citrus clementina cDNA clone C03002D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290978 ID=CX290978; Name=CX290978; organism=Citrus clementina; type=EST; length=295bp
CTTCGCTCCAGTTCCTGACGAGACTCCTCCTACTAAAGACCTCCACGTCA
TCGGCCATCTCCCCGATTGCTTGAATGGGGAGTTTGTCAGGGTTGGTCCT
AATCCCAAGTTTGCCCCTGCGGCCGGATACCACTGGTTTGATGGAGATGG
CATGATTCATGGTCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCC
GTTTTGTGAGGACTTCACGTGTTAAACAGGAAGAATTTTTCGGAGGTGCT
AAAGCTATGAAGATTGGAGACCTTAAGGGGCTATTTGGATTACTC
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