CX290979

Overview
NameCX290979
Unique NameCX290979
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP1_MAIZE (Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 4.299e-66
Identity = 116/149 (77.85%), Postives = 132/149 (88.59%), Query Frame = 1
Query:    7 KAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMG---RNVCGVDSMVSSVAAGHTT 444
            KAGG+E EKDYPYTG+DG  CKFDKSKI ASV NFSV+S DE Q++ANL+KHGP+A GINA +MQTYIGGVSCPYICG++LDHGVL+VGYG+SGFAPIR K+KPYWIIKNSWGENWGENGYYKIC G   RN CGVDSMVS+V+A H +
Sbjct:  222 KAGGLESEKDYPYTGSDG-KCKFDKSKIVASVQNFSVVSVDEAQISANLIKHGPLAIGINAAYMQTYIGGVSCPYICGRHLDHGVLLVGYGASGFAPIRLKDKPYWIIKNSWGENWGENGYYKICRGSNVRNKCGVDSMVSTVSAVHAS 369          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: A494_ARATH (Probable cysteine proteinase A494 OS=Arabidopsis thaliana GN=At2g21430 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 4.754e-65
Identity = 113/148 (76.35%), Postives = 132/148 (89.19%), Query Frame = 1
Query:    4 LKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAGHTTS 447
            LK GG+ REKDYPYTGTDGGSCK D+SKI ASVSNFSV+S +EDQ+AANL+K+GP+A  INA +MQTYIGGVSCPYIC + L+HGVL+VGYGS+GF+  R KEKPYWIIKNSWGE+WGENG+YKIC GRN+CGVDS+VS+VAA  TTS
Sbjct:  216 LKTGGLMREKDYPYTGTDGGSCKLDRSKIVASVSNFSVVSINEDQIAANLIKNGPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGFSQARLKEKPYWIIKNSWGESWGENGFYKICKGRNICGVDSLVSTVAA--TTS 361          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: RD19A_ARATH (Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 4.024e-64
Identity = 111/149 (74.50%), Postives = 132/149 (88.59%), Query Frame = 1
Query:    4 LKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAGHTTSS 450
            LK GG+ +E+DYPYTG DG +CK DKSKI ASVSNFSVIS DE+Q+AANLVK+GP+A  INA +MQTYIGGVSCPYIC + L+HGVL+VGYG++G+AP RFKEKPYWIIKNSWGE WGENG+YKIC GRN+CGVDSMVS+VAA  +T++
Sbjct:  219 LKTGGLMKEEDYPYTGKDGKTCKLDKSKIVASVSNFSVISIDEEQIAANLVKNGPLAVAINAGYMQTYIGGVSCPYICTRRLNHGVLLVGYGAAGYAPARFKEKPYWIIKNSWGETWGENGFYKICKGRNICGVDSMVSTVAATVSTTA 367          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP_PEA (Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 4.919e-62
Identity = 109/148 (73.65%), Postives = 127/148 (85.81%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAGHT 441
            +L++GGV +EKDY YTG DG SCKFDKSK+ ASVSNFSV++ DEDQ+AANLVK+GP+A  INA WMQTY+ GVSCPY+C K  LDHGVL+VG+G   +APIR KEKPYWIIKNSWG+NWGE GYYKIC GRNVCGVDSMVS+VAA  +
Sbjct:  215 LLESGGVVQEKDYAYTGRDG-SCKFDKSKVVASVSNFSVVTLDEDQIAANLVKNGPLAVAINAAWMQTYMSGVSCPYVCAKSRLDHGVLLVGFGKGAYAPIRLKEKPYWIIKNSWGQNWGEQGYYKICRGRNVCGVDSMVSTVAAAQS 361          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: PAPA5_CARPA (Cysteine proteinase (Fragment) OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.712e-44
Identity = 77/95 (81.05%), Postives = 87/95 (91.58%), Query Frame = 1
Query:  163 GPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAGHTTS 447
            GP+A  INA +MQTYIGGVSCPYIC + L+HGVL+VGYGS+G+APIR KEKPYW+IKNSWGENWGENGYYKIC GRN+CGVDSMVS+VAA HTTS
Sbjct:    1 GPLAVAINAAYMQTYIGGVSCPYICSRRLNHGVLLVGYGSAGYAPIRLKEKPYWVIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTS 95          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CYSP1_DICDI (Cysteine proteinase 1 OS=Dictyostelium discoideum GN=cprA PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.229e-30
Identity = 65/141 (46.10%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 423
            I+K GG++ E  YPYT   G  C F+ + I A +SNF++I  +E  MA  +V  GP+A   +AV  Q YIGGV         LDHG+LIVGY +     I  K  PYWI+KNSWG +WGE GY  +  G+N CGV + VS+
Sbjct:  202 IIKNGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKN--TIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVST 340          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CPR1_DROME (Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 8.764e-27
Identity = 65/141 (46.10%), Postives = 85/141 (60.28%), Query Frame = 1
Query:   13 GGVEREKDYPYTGTDGGSCKFDKSKIAASVSNF-SVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPY--ICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 423
            GG+E E +YPY       C F+++     V+ F  +   +E  M   L+ +GP++ GINA  MQ Y GGVS P+  +C K  LDHGVL+VGYG S + P   K  PYWI+KNSWG  WGE GYY++  G N CGV  M +S
Sbjct:  472 GGLEYEAEYPYKAKKN-QCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDY-PNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNTCGVSEMATS 610          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATF_HUMAN (Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.399e-24
Identity = 61/144 (42.36%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 423
            I   GG+E E DY Y G    SC F   K    +++   +S +E ++AA L K GP++  INA  MQ Y  G+S P   +C  +L DH VL+VGYG+         + P+W IKNSWG +WGE GYY +  G   CGV++M SS
Sbjct:  345 IKNLGGLETEDDYSYQG-HMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRS-------DVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 480          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATL_SCHMA (Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.547e-23
Identity = 55/144 (38.19%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPY--ICGKYL-DHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 423
            I+K GG+  E +YPY   +   C      +A  +++   ++ DE ++AA L  +  ++ G+NA+ +Q Y  G+S P+   C KYL DH VL+VGYG S       K +P+WI+KNSWG  WGENGY+++  G   CG++++ +S
Sbjct:  179 IIKMGGLMLEDNYPYDAKNE-KCHLKTDGVAVYINSSVNLTQDETELAAWLYHNSTISVGMNALLLQFYQHGISHPWWIFCSKYLLDHAVLLVGYGVSE------KNEPFWIVKNSWGVEWGENGYFRMYRGDGSCGINTVATS 315          
BLAST of CX290979 vs. ExPASy Swiss-Prot
Match: CATF_MOUSE (Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.501e-23
Identity = 57/144 (39.58%), Postives = 82/144 (56.94%), Query Frame = 1
Query:    1 ILKAGGVEREKDYPYTGTDGGSCKFDKSKIAASVSNFSVISSDEDQMAANLVKHGPVAEGINAVWMQTYIGGVSCPY--ICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSS 423
            I   GG+E E DY Y G    +C F        +++   +S +E+++AA L + GP++  INA  MQ Y  G++ P+  +C   ++DH VL+VGYG+           PYW IKNSWG +WGE GYY +  G   CGV++M SS
Sbjct:  323 IKNLGGLETEDDYGYQG-HVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRS-------NIPYWAIKNSWGSDWGEEGYYYLYRGSGACGVNTMASS 458          
The following BLAST results are available for this feature:
BLAST of CX290979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CYSP1_MAIZE4.299e-6677.85Cysteine proteinase 1 OS=Zea mays GN=CCP1 PE=2 SV=... [more]
A494_ARATH4.754e-6576.35Probable cysteine proteinase A494 OS=Arabidopsis t... [more]
RD19A_ARATH4.024e-6474.50Cysteine proteinase RD19a OS=Arabidopsis thaliana ... [more]
CYSP_PEA4.919e-6273.65Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1[more]
PAPA5_CARPA2.712e-4481.05Cysteine proteinase (Fragment) OS=Carica papaya PE... [more]
CYSP1_DICDI2.229e-3046.10Cysteine proteinase 1 OS=Dictyostelium discoideum ... [more]
CPR1_DROME8.764e-2746.10Putative cysteine proteinase CG12163 OS=Drosophila... [more]
CATF_HUMAN1.399e-2442.36Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1[more]
CATL_SCHMA1.547e-2338.19Cathepsin L OS=Schistosoma mansoni GN=CL1 PE=2 SV=... [more]
CATF_MOUSE4.501e-2339.58Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC03002D12Rv OF1 Citrus clementina cDNA clone C03002D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290979 ID=CX290979; Name=CX290979; organism=Citrus clementina; type=EST; length=491bp
ATACTCAAGGCTGGTGGGGTTGAGCGAGAGAAGGACTACCCTTACACTGG
GACCGACGGTGGTTCCTGCAAATTTGACAAAAGCAAAATTGCTGCATCTG
TATCTAATTTCAGTGTTATTTCCTCTGATGAAGATCAAATGGCTGCAAAT
TTGGTGAAACATGGCCCTGTGGCAGAGGGTATCAATGCCGTTTGGATGCA
AACATATATTGGAGGAGTTTCATGCCCATACATTTGCGGGAAGTATTTGG
ATCATGGAGTGCTTATCGTGGGCTATGGATCTTCAGGTTTCGCCCCGATC
CGTTTCAAGGAGAAGCCTTACTGGATCATAAAGAACTCCTGGGGAGAGAA
CTGGGGAGAGAATGGATATTATAAGATCTGCATGGGTCGCAATGTCTGTG
GGGTCGACTCCATGGTCTCATCTGTAGCTGCTGGCCATACAACCTCAAGC
TAGACATTATGGAGGTTGTGCTAGGCAAGTGGAGCTTATAT
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