CX290980

Overview
NameCX290980
Unique NameCX290980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig73 contig Ccv1_Contig73:86..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290980 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.371e-18
Identity = 52/134 (38.81%), Postives = 81/134 (60.45%), Query Frame = 3
Query:  114 GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPFDE-TLHKKLRIRYRVDRIPSLIPLASD-GTLI-EEDLIGLIEDYGADAYPF 506
            G   LLS+ G+V L S  GKT+ L+FSA+WC PC+ FTP L + Y+         EV+ IS+D +E+ F +++  MPWLA+PFD+ +   +L   + V+ IP+LI + +D G +I  +    +IED     +P+
Sbjct:   10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV-AKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW 142          
BLAST of CX290980 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.980e-17
Identity = 45/122 (36.89%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  156 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRK 515
            SS  G  + ++FSA+WC PC++ T  LV+ Y  ++  G E E+IF+S D  E  F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCREFPWHPK 310          
BLAST of CX290980 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.377e-17
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  156 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRK 515
            SS  G  + ++FSA+WC PC++ T  LV+ Y  ++  G + E+IF+S D  E+ F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPWHPK 310          
BLAST of CX290980 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 3
Query:  156 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRK 515
            SS  G  + ++FSA+WC PC++ T  LV+ Y  ++  G   E+IF+S D  E  F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPK 310          
BLAST of CX290980 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.859e-16
Identity = 40/115 (34.78%), Postives = 68/115 (59.13%), Query Frame = 3
Query:  168 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPF 506
            G  + ++FSA+WC PC++ T  LV+ Y  ++  G + E++F+S D  E  F ++F  MPWLAVP+ DE    +L   Y +  IP+LI L ++G +I  +  + ++ D     +P+
Sbjct:  176 GSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEILNDPDCGLFPW 290          
BLAST of CX290980 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.419e-15
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 3
Query:  156 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKCMPWLAVPF-DETLHKKLRIRYRVDRIPSLIPLASDGTLI-EEDLIGLIEDYGADAYPFTRK 515
            S+  G  + ++FSA WC PC++ T  LV+ Y  ++  G + E++ +S D  E  F+++F  MPWLAVP+ DE    +L   Y +  IP+LI L   G +I  +  + ++ D     +P+  K
Sbjct:  168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVLRDIDCKEFPWHPK 289          
The following BLAST results are available for this feature:
BLAST of CX290980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TYPX_TRYBB1.371e-1838.81Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
NXN_MOUSE1.980e-1736.89Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_BOVIN3.377e-1736.07Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_HUMAN7.523e-1736.07Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_DANRE2.859e-1634.78Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
NXN_XENLA1.419e-1533.61Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC03002E01Rv OF1 Citrus clementina cDNA clone C03002E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290980 ID=CX290980; Name=CX290980; organism=Citrus clementina; type=EST; length=528bp
ATTAAAAGAAGCAGAGTGGATACCAGCTTCAGCTTGTTGTTCTAATGGCA
AGAGACAACGATCAATCCAAATTTATTGACAGCAGCGACTTTCTGACAGT
CTTAGCATCTGAAGGTGTAGAGTTCCTTCTTTCTCGTCAAGGAAAGGTAC
CCTTGTCATCATGTGGTGGCAAGACAATTTGCCTCTTCTTCTCTGCTAAC
TGGTGCAGACCATGTAAAACTTTTACTCCACAATTGGTGCAACTTTATGA
CACGCTAAGAACCAGAGGTACAGAGCTGGAAGTTATCTTCATTTCCTTTG
ACCATGATGAGAATGGATTCGAGGAGCACTTCAAGTGTATGCCCTGGCTT
GCTGTTCCATTTGATGAAACCTTGCATAAAAAATTAAGAATCAGGTATCG
AGTTGATCGCATCCCATCGCTCATTCCATTAGCTTCAGATGGGACATTAA
TTGAAGAAGACTTGATCGGATTGATTGAAGACTATGGAGCTGATGCATAT
CCTTTCACCAGAAAGAGAAGGGAAGAAT
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