CX291022

Overview
NameCX291022
Unique NameCX291022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291022_ssr281 microsatellite CX291022_ssr281:281..292. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPR (Glycine cleavage system H protein, mitochondrial OS=Flaveria pringlei GN=GDCSH PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.106e-46
Identity = 86/125 (68.80%), Postives = 105/125 (84.00%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDSKH 386
            LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+V+LPE G +V +   FGAVESVKATSDVNSP+SG++VEVN +LS +P L+NSSPY+DGW+IKV+  +  EL  LM A +YTKFCEEEDS H
Sbjct:   38 LKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDSAH 162          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_PEA (Glycine cleavage system H protein, mitochondrial OS=Pisum sativum GN=GDCSH PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.444e-46
Identity = 86/125 (68.80%), Postives = 105/125 (84.00%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDSKH 386
            LKYA SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPE GV+V +G  FGAVESVKATSDVNSP+SG+V+EVN  L+  P L+NSSPY+DGW+IK++  S  EL+ L+ A +YTKFCEEED+ H
Sbjct:   41 LKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 165          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAN (Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.464e-46
Identity = 85/125 (68.00%), Postives = 105/125 (84.00%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDSKH 386
            LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+V+LPE G +V +   FGAVESVKATSDVNSP+SG++VEVN +LS +P L+NSSPY+DGW+IKV+  +  EL  LM A +YTKFCEEED+ H
Sbjct:   38 LKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYTKFCEEEDAAH 162          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSJ (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.558e-45
Identity = 84/123 (68.29%), Postives = 102/123 (82.93%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDS 380
            LKY+ SHEWVK DG+ ATIGITDHAQ HLG+VV+VELPE G  V QG +FG VESVKATSD+NSP+SG+VVEVN++LS +P L+NSSPY+DGW+IKV+  S  EL  L+D  +YTK CEEED+
Sbjct:   41 LKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_ORYSI (Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.558e-45
Identity = 84/123 (68.29%), Postives = 102/123 (82.93%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDS 380
            LKY+ SHEWVK DG+ ATIGITDHAQ HLG+VV+VELPE G  V QG +FG VESVKATSD+NSP+SG+VVEVN++LS +P L+NSSPY+DGW+IKV+  S  EL  L+D  +YTK CEEED+
Sbjct:   41 LKYSSSHEWVKNDGSVATIGITDHAQGHLGEVVFVELPEAGAKVSQGGAFGNVESVKATSDINSPISGEVVEVNDKLSETPGLINSSPYEDGWMIKVKPSSPSELDALLDPAKYTKHCEEEDA 163          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH2_ARATH (Probable glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=At1g32470 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.035e-44
Identity = 83/128 (64.84%), Postives = 106/128 (82.81%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDSKH 386
            ++ LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPE   +V +  SFGAVESVKATS++ SP+SG+V+EVN +L+ SP L+NSSPY+DGW+IKV+  S  EL+ LM   +YTKFCEEED+ H
Sbjct:   39 LEGLKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEANSSVSKEKSFGAVESVKATSEILSPISGEVIEVNTKLTESPGLINSSPYEDGWMIKVKPSSPAELEALMGPKEYTKFCEEEDAAH 166          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_FLATR (Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.934e-44
Identity = 82/121 (67.77%), Postives = 101/121 (83.47%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEE 374
            LKYA+SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPEVG +V +   FGAVESVKATSDVNSP+SG++VEVN +L+ +P L+N SPY+DGW+IKV+  +  EL  LM   +YTKFCEEE
Sbjct:   40 LKYANSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSELDSLMGPKEYTKFCEEE 160          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 6.710e-44
Identity = 81/128 (63.28%), Postives = 106/128 (82.81%), Query Frame = 3
Query:    3 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDSKH 386
            ++ LKYA+SHEWVK +G+ ATIGIT HAQDHLG+VV+VELPE   +V +  SFGAVESVKATS++ SP+SG+++EVN++L+ SP L+NSSPY+DGW+IKV+  S  EL+ LM   +YTKFCEEED+ H
Sbjct:   38 LEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVNKKLTESPGLINSSPYEDGWMIKVKPSSPAELESLMGPKEYTKFCEEEDAAH 165          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_MESCR (Glycine cleavage system H protein, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCSH PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.071e-41
Identity = 81/123 (65.85%), Postives = 99/123 (80.49%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYTKFCEEEDS 380
            LKYA SHEWVK  G+ ATIGITDHAQ HLGDVV+ ELPE G  V  G  F +VESVKATSDVNSP+SG++VEVN +LS SP L+NSSPY++GW++KV+  +  EL+ LM + +YTKFCEEED+
Sbjct:   41 LKYASSHEWVKHGGSVATIGITDHAQGHLGDVVFAELPEGGA-VSAGKPFASVESVKATSDVNSPISGEIVEVNTKLSDSPGLLNSSPYEEGWMVKVKPSNPAELESLMGSKEYTKFCEEEDA 162          
BLAST of CX291022 vs. ExPASy Swiss-Prot
Match: GCSH_FLAPU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria pubescens GN=GDCSH PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.547e-40
Identity = 76/115 (66.09%), Postives = 96/115 (83.48%), Query Frame = 3
Query:   12 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQGASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYKDGWIIKVEMDSAGELKKLMDADQYT 356
            LKYA+SHEWVK +G+ AT+GITDHAQDHLG+VV+V+LPE G +V +   FGAVESVKATSDVNSP+SG++VEVN +LS +P L+NSSPY+DGW+IKV+  +  EL  LM A +YT
Sbjct:   38 LKYANSHEWVKHEGSVATVGITDHAQDHLGEVVFVDLPEAGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLSETPGLINSSPYEDGWMIKVKPSNPSELDSLMGAKEYT 152          
The following BLAST results are available for this feature:
BLAST of CX291022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 462
Match NameE-valueIdentityDescription
GCSH_FLAPR1.106e-4668.80Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_PEA1.444e-4668.80Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAAN2.464e-4668.00Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSJ3.558e-4568.29Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_ORYSI3.558e-4568.29Glycine cleavage system H protein, mitochondrial O... [more]
GCSH2_ARATH1.035e-4464.84Probable glycine cleavage system H protein 2, mito... [more]
GCSH_FLATR3.934e-4467.77Glycine cleavage system H protein, mitochondrial O... [more]
GCSH1_ARATH6.710e-4463.28Glycine cleavage system H protein 1, mitochondrial... [more]
GCSH_MESCR1.071e-4165.85Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_FLAPU1.547e-4066.09Glycine cleavage system H protein, mitochondrial (... [more]

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Properties
Property NameValue
Genbank descriptionC03003A09SK OF2 Citrus clementina cDNA clone C03003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291022 ID=CX291022; Name=CX291022; organism=Citrus clementina; type=EST; length=389bp
TTATAAAGGATCTAAAGTATGCTGACTCTCATGAATGGGTTAAGGTTGAT
GGTAACTCTGCAACCATTGGTATAACTGACCATGCTCAAGATCATTTAGG
CGATGTTGTGTATGTTGAATTACCAGAGGTAGGGGTTACAGTAAAGCAAG
GTGCCAGCTTTGGTGCAGTTGAAAGTGTCAAGGCTACTAGTGATGTTAAT
TCTCCTGTTTCTGGGAAAGTGGTTGAAGTTAATGAAGAGCTCAGCAGTTC
ACCTGCTTTGGTCAACTCAAGCCCATACAAGGATGGATGGATTATAAAAG
TGGAGATGGACAGTGCTGGTGAATTGAAGAAGTTGATGGATGCTGATCAA
TACACCAAGTTCTGTGAAGAAGAAGATTCAAAACACTGA
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