CX291023

Overview
NameCX291023
Unique NameCX291023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12075 contig Ccv1_Contig12075:55..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNJ16_ARATH (Chaperone protein dnaJ 16 OS=Arabidopsis thaliana GN=ATJ16 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.795e-53
Identity = 105/136 (77.21%), Postives = 114/136 (83.82%), Query Frame = 1
Query:  199 MPAQRSKSERSDAGKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKLGVPIKTTVSATVLEEALNG 606
            MP  RSKSE+ DA KQLRRDPYEVLGV RN TDQEIKSAYRK+ALKYHPDK ANDPVAAD+FKE TFSYNILSDP+KRRQ+D+AGFEAV              GAVNT+FAALFSKLGVPIKT+VSAT+LEEALNG
Sbjct:    1 MPGHRSKSEKKDADKQLRRDPYEVLGVLRNSTDQEIKSAYRKLALKYHPDKTANDPVAADMFKEVTFSYNILSDPEKRRQFDSAGFEAVEAESQELELDLSSLGAVNTVFAALFSKLGVPIKTSVSATILEEALNG 136          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNJ15_ARATH (Chaperone protein dnaJ 15 OS=Arabidopsis thaliana GN=ATJ15 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.059e-41
Identity = 84/119 (70.59%), Postives = 95/119 (79.83%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKLGVPIKTTVSATVLEEALNG 606
            RRDPYEVL VS++  DQEIKSAYRK+ALKYHPDKNAN+P A+++FKE  FSY+ILSDP+KRR YD AGFEA+              G VNTMFAALFSKLGVPIKTTVSA VLEEA+NG
Sbjct:   15 RRDPYEVLCVSKDANDQEIKSAYRKLALKYHPDKNANNPDASELFKEVAFSYSILSDPEKRRHYDNAGFEALDADGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTVSANVLEEAMNG 133          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNJ39_ARATH (Chaperone protein dnaJ 39 OS=Arabidopsis thaliana GN=ATJ39 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 5.989e-41
Identity = 86/139 (61.87%), Postives = 102/139 (73.38%), Query Frame = 1
Query:  199 MPAQRSKSERSDAGKQ---LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKLGVPIKTTVSATVLEEALNG 606
            M    S+SE  DAG++    RR+PYEVLG+  N TDQEIKSAYR+MAL+YHPDKN +DPVAA++FKE TF+Y +LSDP+ RR YDT G EAV              GAVNT+FAALF+KLGV IKTTVSA +L EALNG
Sbjct:    1 MATHSSRSENKDAGEEDELRRRNPYEVLGIPSNSTDQEIKSAYRRMALRYHPDKNPDDPVAAEMFKEVTFAYEVLSDPENRRLYDTTGSEAVGPENEDLELDLSSLGAVNTIFAALFNKLGVQIKTTVSANLLGEALNG 139          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-18
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  247 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            ++RD YE+LGV+RN T +EIK AYRK+A KYHPD N +DP AA+ FKE   +Y +LSDP+KR +YD  G   V
Sbjct:    1 MKRDYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQFGHAGV 73          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_PORGI (Chaperone protein dnaJ OS=Porphyromonas gingivalis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.587e-17
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            +RD YEVLGVS+N TD E+K AYRK A++YHPDKN  D  A + FKE   +Y++LSDP KR QYD  G
Sbjct:    4 KRDYYEVLGVSKNATDDELKKAYRKKAIQYHPDKNPGDKEAEEHFKEVAEAYDVLSDPQKRSQYDQFG 71          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYWF (Chaperone protein dnaJ OS=Psychrobacter sp. (strain PRwf-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAVXXXXXXXXXXXXXXGAVNTMFAALFSKLG 552
            +RD YEVLGV R+  ++EIK AYRK+A+KYHPD+N++DP A + FKE + +Y +LSD +KR  YD  G  A               G    +F  +F   G
Sbjct:    3 KRDFYEVLGVDRSADEREIKKAYRKLAMKYHPDRNSDDPDAEEKFKEASMAYEVLSDKEKRSAYDRMGHAAFENGMGGGGFGGAGAGNFQDIFGDIFGNFG 103          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.073e-17
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV +N +D EIK A+RK+A++YHPDKN +D  A + FKE T +Y +LSDP KR QYD  G   V
Sbjct:    5 KRDYYEVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRAQYDQFGHAGV 76          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_PORG3 (Chaperone protein dnaJ OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-17
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAG 453
            +RD YEVLGVS+N TD E+K AYRK A++YHPDKN  D  A + FKE   +Y++LSDP+KR +YD  G
Sbjct:    4 KRDYYEVLGVSKNATDDELKKAYRKKAIQYHPDKNPGDKEAEEHFKEVAEAYDVLSDPEKRSRYDQFG 71          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_SYMTH (Chaperone protein dnaJ OS=Symbiobacterium thermophilum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.031e-17
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEA 462
            +RD YE+LGV RN T+ EIK A+R +A KYHPD N +DP AA+ FKE   +Y +LSDP+KR +YD  G  A
Sbjct:    6 KRDYYEILGVPRNATEAEIKKAFRNLARKYHPDANKDDPDAAEKFKEINEAYQVLSDPEKRARYDQFGHAA 76          
BLAST of CX291023 vs. ExPASy Swiss-Prot
Match: DNAJ_THIDA (Chaperone protein dnaJ OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-16
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  250 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEFTFSYNILSDPDKRRQYDTAGFEAV 465
            +RD YEVLGV++N +D+EIK AYRK+A+K+HPD+N  D  A D FKE   +Y ILSD DKR  YD  G   V
Sbjct:    3 KRDYYEVLGVAKNASDEEIKKAYRKLAMKHHPDRNPGDHAAEDKFKEAKQAYEILSDSDKRAAYDQFGHAGV 74          
The following BLAST results are available for this feature:
BLAST of CX291023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNJ16_ARATH1.795e-5377.21Chaperone protein dnaJ 16 OS=Arabidopsis thaliana ... [more]
DNJ15_ARATH2.059e-4170.59Chaperone protein dnaJ 15 OS=Arabidopsis thaliana ... [more]
DNJ39_ARATH5.989e-4161.87Chaperone protein dnaJ 39 OS=Arabidopsis thaliana ... [more]
DNAJ_CARHZ2.449e-1857.53Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_PORGI1.587e-1760.29Chaperone protein dnaJ OS=Porphyromonas gingivalis... [more]
DNAJ_PSYWF2.073e-1742.57Chaperone protein dnaJ OS=Psychrobacter sp. (strai... [more]
DNAJ_GEOSL2.073e-1756.94Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]
DNAJ_PORG32.707e-1758.82Chaperone protein dnaJ OS=Porphyromonas gingivalis... [more]
DNAJ_SYMTH6.031e-1756.34Chaperone protein dnaJ OS=Symbiobacterium thermoph... [more]
DNAJ_THIDA1.029e-1656.94Chaperone protein dnaJ OS=Thiobacillus denitrifica... [more]

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Properties
Property NameValue
Genbank descriptionC03003A10SK OF2 Citrus clementina cDNA clone C03003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291023 ID=CX291023; Name=CX291023; organism=Citrus clementina; type=EST; length=606bp
ATCAAGTCTAGTCTAGGGTTTCCTTATTCTTTTCTCACCAGTCTGTTATT
TTTCCGAGAAAAGATTAAGAAAAAAAAATGCGAGAGAATTTGGGAGGAAC
AATTGTTTGTTTTTCGTTTTCGTCTAAAAAAAATTTTCTGTCTCGGTAGT
GGTTTCTAGGGCCTTTGAGTGGAGTTTTTTCACGTTCTTTTATTGAAAAT
GCCGGCTCAACGATCCAAGTCCGAGAGAAGCGATGCGGGAAAGCAGCTCC
GGCGGGACCCCTACGAGGTTCTCGGCGTCTCCAGGAACTGTACGGATCAA
GAAATCAAGAGCGCCTACAGGAAAATGGCTCTAAAGTACCATCCTGATAA
GAATGCAAATGACCCTGTAGCAGCTGATATTTTTAAGGAGTTTACATTTT
CCTATAATATCTTGTCAGATCCTGACAAAAGACGACAGTATGACACCGCT
GGTTTTGAGGCTGTTGAATCAGAAAGTCAAGAATTGGAGCTAGATCTTTC
TAGTTTGGGAGCTGTGAACACCATGTTTGCTGCACTTTTTAGTAAACTTG
GTGTGCCAATCAAGACCACTGTATCGGCTACTGTCTTGGAGGAGGCACTT
AATGGC
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