CX291033

Overview
NameCX291033
Unique NameCX291033
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8 contig Ccv1_Contig8:131..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Bos taurus GN=PIN4 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 52/105 (49.52%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGV------TSAPFKSTHGYHIILCEGRK 393
            VK RHILCEK G I EA +KL+ G           +F+++AA+YSE    ++GGDLGW  RG M GPFQE AF  P+ V      T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKILEAMEKLKSGM----------KFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPISVLDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.428e-19
Identity = 52/105 (49.52%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVG------VTSAPFKSTHGYHIILCEGRK 393
            VK RHILCEK G I EA +KL+ G            F+++AA+YSE    ++GGDLGW  RG M GPFQE AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKIMEAMEKLKSGM----------RFNEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Mus musculus GN=Pin4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.865e-19
Identity = 52/105 (49.52%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVG------VTSAPFKSTHGYHIILCEGRK 393
            VK RHILCEK G I EA +KL+ G            FS++A +YSE    ++GGDLGW  RG M GPFQE AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   38 VKVRHILCEKHGKIMEAMEKLKSGM----------RFSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_TAEGU (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Taeniopygia guttata GN=PIN4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.435e-19
Identity = 52/105 (49.52%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVG------VTSAPFKSTHGYHIILCEGRK 393
            VK RHILCEK G   EA +KL+ G            FS++AA+YSE    ++GGDLGW  RG M GPFQE AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   35 VKVRHILCEKHGRAMEAMEKLKSG----------QRFSEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQEAAFALPVSSMDKPVYTDPPVKTKFGYHIIMVEGRK 128          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_XENTR (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Xenopus tropicalis GN=pin4 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.180e-19
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGV------TSAPFKSTHGYHIILCEGRK 393
            VK RHILCEK G + EA +KL+ G            FS++A +YSE    ++GGDLGW  RG M GPFQ+ AF  PV        T  P K+  GYHII+ EGRK
Sbjct:   34 VKVRHILCEKHGKVMEAMEKLKSG----------VRFSEVATQYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPVSTMDKPVYTDPPVKTKFGYHIIMVEGRK 127          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_DANRE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Danio rerio GN=pin4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.253e-19
Identity = 49/107 (45.79%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   91 TYVKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGV------TSAPFKSTHGYHIILCEGRK 393
            T VK RHILCEK G   EA +K++ G            FS++AA+YSE    ++GGDLGW  RG M GPFQ+ AF  P+        T  P K+  GYHII+ EG+K
Sbjct:   33 TAVKVRHILCEKHGKCMEAMEKIKSGM----------RFSEVAAQYSE-DKARQGGDLGWMTRGSMVGPFQDAAFALPISTMDKPVYTDPPVKTKFGYHIIMVEGKK 128          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_EMENI (Peptidyl-prolyl cis-trans isomerase pin4 OS=Emericella nidulans GN=pin4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 43/103 (41.75%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAP----FKSTHGYHIILCEGRK 393
            V  RHILCEK     EA +K+++G          A+F ++A EYSE    ++GG LGW  +G++  PF+EVAF+     T  P     K+ +GYHII+ EGRK
Sbjct:   37 VNVRHILCEKFSKKEEALEKIRNG----------AKFDEVAREYSE-DKARQGGSLGWKSKGELELPFEEVAFSLEQSTTGNPKIGEAKTGYGYHIIMVEGRK 128          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_NEUCR (Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neurospora crassa GN=pin-4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.608e-13
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAP----FKSTHGYHIILCEGRK 393
            +  RHILCEK G   EA  K++DG          A+F  +A EYSE    + GG LGW  +G +   F++VAF      TS+P     K+  GYHII+ EG+K
Sbjct:   39 INVRHILCEKHGKKEEALAKIRDG----------ADFGAVAREYSE-DKARTGGSLGWKQKGTLDPEFEKVAFALETSSTSSPKIGEVKTQFGYHIIMVEGKK 130          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PIN4_GIBZE (Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibberella zeae GN=PIN4 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.608e-13
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECPSGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAP----FKSTHGYHIILCEGRK 393
            +  RHILCEK     EA  KL DG           +F ++A EYSE    ++GG LGW  +G +   F+EVAF      T++P     K+  GYHII+ EGRK
Sbjct:   42 INVRHILCEKHAKKEEALAKLNDG----------VKFDEVAREYSE-DKARQGGSLGWKTKGSLDPKFEEVAFALETSTTNSPKFVEVKTGFGYHIIMVEGRK 133          
BLAST of CX291033 vs. ExPASy Swiss-Prot
Match: PRSA_GEOTN (Foldase protein prsA OS=Geobacillus thermodenitrificans (strain NG80-2) GN=prsA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.406e-13
Identity = 41/94 (43.62%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   97 VKARHILCEKQGNINEAYKKLQDGWLSNGDKVPQAEFSKIAAEYSECP-SGKKGGDLGWFPRGKMAGPFQEVAFNTPVGVTSAPFKSTHGYHII 375
            V+A HIL E +    E   KL  G           +F+K+A EYS+ P S   GGDLGWF  GKM   F+E A+   VG  S P K+ +GYHII
Sbjct:  136 VRASHILVEDEKTAKEVKAKLDKG----------EDFAKLAKEYSQDPGSASNGGDLGWFGAGKMVKEFEEAAYKLKVGEVSDPIKTDYGYHII 219          
The following BLAST results are available for this feature:
BLAST of CX291033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PIN4_BOVIN4.907e-2049.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_HUMAN1.428e-1949.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_MOUSE1.865e-1949.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_TAEGU2.435e-1949.52Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_XENTR3.180e-1947.62Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_DANRE9.253e-1945.79Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN4_EMENI6.862e-1441.75Peptidyl-prolyl cis-trans isomerase pin4 OS=Emeric... [more]
PIN4_NEUCR2.608e-1340.78Peptidyl-prolyl cis-trans isomerase pin-4 OS=Neuro... [more]
PIN4_GIBZE2.608e-1340.78Peptidyl-prolyl cis-trans isomerase PIN4 OS=Gibber... [more]
PRSA_GEOTN3.406e-1343.62Foldase protein prsA OS=Geobacillus thermodenitrif... [more]

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Properties
Property NameValue
Genbank descriptionC03003B09SK OF2 Citrus clementina cDNA clone C03003B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291033 ID=CX291033; Name=CX291033; organism=Citrus clementina; type=EST; length=452bp
AAGGGTAAAGGAAAACAGGCAGCTGGTGGAGCTGATGATTCAAAGGGTAA
AGGAAAAGGCGGGAAGTCAGCTGATGGCCTCGGCACCTGCACATATGTCA
AAGCACGACACATCTTATGTGAGAAGCAAGGGAATATCAATGAGGCATAC
AAGAAGCTGCAAGATGGTTGGCTGAGCAATGGGGACAAGGTTCCACAAGC
TGAGTTTTCAAAGATAGCTGCAGAATACTCAGAATGCCCGTCAGGAAAGA
AGGGTGGAGATCTTGGATGGTTTCCACGTGGAAAGATGGCTGGCCCATTT
CAGGAAGTTGCCTTCAATACTCCTGTTGGAGTTACCAGTGCACCTTTCAA
GTCTACGCATGGATACCACATAATCTTGTGTGAAGGGAGGAAGAATTGAT
CGGAAACAGTATGCCAATGAAGGGAATCTCTGAAGGGCGAGCATGGAGAT
GA
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