CX291035

Overview
NameCX291035
Unique NameCX291035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: U195A_ARATH (UPF0195 protein At1g68310 OS=Arabidopsis thaliana GN=At1g68310 PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 1.628e-64
Identity = 117/154 (75.97%), Postives = 138/154 (89.61%), Query Frame = 3
Query:   15 MVSGLINAHPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            MVSGLIN +P++Y KKERR R+ +S + DE   E IDQ E+FDH+RDIKDPEHP +LE+L+V+TED++EVDDE SYVRVTFTPTVEHCSMATVIGLC+RVKL+RSLP R+K+DI VAPG+HATE A+NKQLNDKERVAAALENPNLV+MVDECL
Sbjct:    1 MVSGLINENPIIYPKKERRLRTDTS-ITDELTPEPIDQLEIFDHIRDIKDPEHPNTLEDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSLPSRYKIDIRVAPGSHATEDALNKQLNDKERVAAALENPNLVEMVDECL 153          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: U195A_DROME (UPF0195 protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.702e-43
Identity = 82/155 (52.90%), Postives = 118/155 (76.13%), Query Frame = 3
Query:   15 MVSGLINAHPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 479
            M + + N +P VY++ + R  +A+    DE   +  D++E+FD +R+I DPEHP +LEEL V+ ED I ++D ++ V ++FTPT+ HCSMAT+IGL +RVKL+RSLPPRFKV + + PGTHA+E AVNKQL DKERVAAALEN +L +++++C+A
Sbjct:    1 MPTEIENINPNVYDRIKERVLTANE--EDENVPDPFDKREIFDLIRNINDPEHPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLRSLPPRFKVTVEITPGTHASELAVNKQLADKERVAAALENNHLAEVINQCIA 153          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: FA96B_MOUSE (UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.027e-42
Identity = 84/151 (55.63%), Postives = 113/151 (74.83%), Query Frame = 3
Query:   27 LINAHPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 479
            L NA+P++YE+   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V+ +  I+V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA+E AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct:   12 LENANPLIYERSGERPVTAGE--EDEEVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRIQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLS 160          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: FA96B_HUMAN (UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.287e-42
Identity = 82/151 (54.30%), Postives = 113/151 (74.83%), Query Frame = 3
Query:   27 LINAHPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECLA 479
            L NA+P++Y++   R  +A     DE   + ID +E+FD +R I DPEHP +LEEL V+ +  ++V D  S V V FTPT+ HCSMAT+IGL ++VKL+RSLP RFK+D+ + PGTHA+E AVNKQL DKERVAAALEN +L+++V++CL+
Sbjct:   12 LENANPLIYQRSGERPVTAGE--EDEQVPDSIDAREIFDLIRSINDPEHPLTLEELNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMDVHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLS 160          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: U195_CAEEL (UPF0195 protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.303e-41
Identity = 80/152 (52.63%), Postives = 112/152 (73.68%), Query Frame = 3
Query:   27 LINAHPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEV--DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            L NA+P +++ K R  R  +    DE   + ID  E+FD +RDI DPEHPY+LE+L V+ E+ I+V  D+E ++V+V FTPT+ HCSMAT+IGL +RVKL+RSL P+ KV + + PG+H+TE ++N+QL DKERVAAA+EN  L+  V+ECL
Sbjct:    6 LDNANPTLFDSKPRH-RPVTGTERDESVEDPIDSWEIFDLIRDINDPEHPYTLEQLNVVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: U195B_ARATH (UPF0195 protein At3g09380 OS=Arabidopsis thaliana GN=At3g09380 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 1.639e-40
Identity = 84/155 (54.19%), Postives = 113/155 (72.90%), Query Frame = 3
Query:   15 MVSGLINAHPVVYEKKERRARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHP-YSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            M S L N +P++Y K+ RR R+  S   DE+++         + +RDIKDPEHP  SLE+L V+TE+++EVDD +SYVR+TFTPT+ HC + T IGLC+ VKL++SLP RFKVD+ VAPG+H  E  VNKQL DKERV AALENP LV ++++ +
Sbjct:    1 MDSVLTNKNPIIYPKRTRRYRTDQSST-DEFSST--------NRIRDIKDPEHPELSLEDLNVLTEESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILVKLVQSLPARFKVDVRVAPGSHDKETTVNKQLGDKERVTAALENPELVALLNKMM 146          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: FA96B_DICDI (UPF0195 protein FAM96B OS=Dictyostelium discoideum GN=fam96B PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 3.537e-35
Identity = 73/157 (46.50%), Postives = 111/157 (70.70%), Query Frame = 3
Query:   33 NAHPVVYEKKER--------RARSASSCVNDEYAAEQIDQQEVFDHVRDIKDPEHPYSLEELKVITEDAIEVDDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALE-NPNLVDMVDECL 476
            N +PV+Y   E          + ++S    +E   ++ D+QE+FD VR I DPEHP +LE+L V+  + + ++ E SY+ + FTPTV HCSMA +IGL ++ KL RSLP RFKVD++V PG+H++E++VNKQLNDKERV+AAL+ + +++ +V+EC+
Sbjct:    4 NPNPVIYVDNENCKSFEDNENSFNSSRYSIEEDQIDEFDEQEIFDLVRSITDPEHPLTLEQLNVVRIENVNINLENSYILLYFTPTVPHCSMANLIGLSIKEKLARSLPKRFKVDVIVTPGSHSSESSVNKQLNDKERVSAALDTSSSILTIVNECI 160          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: FA96A_MOUSE (UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.138e-33
Identity = 69/118 (58.47%), Postives = 94/118 (79.66%), Query Frame = 3
Query:  132 EVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD--ERSY-VRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            EV+D +R I+DPE P +LEEL+V+TE  +EV +  E  Y V + FTPTV HCS+AT+IGLCLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct:   39 EVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIKFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: FA96A_HUMAN (UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.138e-33
Identity = 67/118 (56.78%), Postives = 94/118 (79.66%), Query Frame = 3
Query:  132 EVFDHVRDIKDPEHPYSLEELKVITEDAIEV---DDERSYVRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            EV+D +R I+DPE P +LEEL+V++E  +EV   ++E   V + FTPTV HCS+AT+IGLCLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct:   39 EVYDLIRTIRDPEKPNTLEELEVVSESCVEVQEINEEEYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
BLAST of CX291035 vs. ExPASy Swiss-Prot
Match: FA96A_BOVIN (UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.138e-33
Identity = 69/118 (58.47%), Postives = 94/118 (79.66%), Query Frame = 3
Query:  132 EVFDHVRDIKDPEHPYSLEELKVITEDAIEVDD--ERSY-VRVTFTPTVEHCSMATVIGLCLRVKLMRSLPPRFKVDIMVAPGTHATEAAVNKQLNDKERVAAALENPNLVDMVDECL 476
            EV+D +R I+DPE P +LEEL+V+TE  +EV +  E  Y V + FTPTV HCS+AT+IGLCLRVKL R LP + K++I ++ GTH+TE  +NKQ+NDKERVAAA+ENPNL ++V++C+
Sbjct:   39 EVYDLIRTIRDPEKPNTLEELEVVTESCVEVQEINEDDYLVIIRFTPTVPHCSLATLIGLCLRVKLQRCLPFKHKLEIYISEGTHSTEEDINKQINDKERVAAAMENPNLREIVEQCV 156          
The following BLAST results are available for this feature:
BLAST of CX291035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
U195A_ARATH1.628e-6475.97UPF0195 protein At1g68310 OS=Arabidopsis thaliana ... [more]
U195A_DROME2.702e-4352.90UPF0195 protein CG7949 OS=Drosophila melanogaster ... [more]
FA96B_MOUSE1.027e-4255.63UPF0195 protein FAM96B OS=Mus musculus GN=Fam96b P... [more]
FA96B_HUMAN2.287e-4254.30UPF0195 protein FAM96B OS=Homo sapiens GN=FAM96B P... [more]
U195_CAEEL3.303e-4152.63UPF0195 protein F45G2.10 OS=Caenorhabditis elegans... [more]
U195B_ARATH1.639e-4054.19UPF0195 protein At3g09380 OS=Arabidopsis thaliana ... [more]
FA96B_DICDI3.537e-3546.50UPF0195 protein FAM96B OS=Dictyostelium discoideum... [more]
FA96A_MOUSE1.138e-3358.47UPF0195 protein FAM96A OS=Mus musculus GN=Fam96a P... [more]
FA96A_HUMAN1.138e-3356.78UPF0195 protein FAM96A OS=Homo sapiens GN=FAM96A P... [more]
FA96A_BOVIN1.138e-3358.47UPF0195 protein FAM96A OS=Bos taurus GN=FAM96A PE=... [more]

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Properties
Property NameValue
Genbank descriptionC03003B11SK OF2 Citrus clementina cDNA clone C03003B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291035 ID=CX291035; Name=CX291035; organism=Citrus clementina; type=EST; length=525bp
AAAAATCAGTGAAAATGGTTTCTGGGTTGATAAATGCACATCCTGTAGTG
TATGAAAAGAAAGAACGGCGGGCTCGAAGTGCTTCGTCTTGTGTTAACGA
TGAGTATGCAGCTGAACAAATTGACCAACAAGAAGTATTTGATCATGTTA
GAGATATAAAAGATCCCGAGCATCCATACTCATTGGAAGAACTTAAAGTT
ATAACAGAGGATGCAATTGAAGTGGATGATGAGCGTAGCTATGTCAGGGT
CACATTTACTCCTACAGTTGAGCACTGCAGTATGGCAACAGTTATAGGTC
TGTGCTTGCGGGTGAAACTTATGAGGAGCTTGCCTCCTCGTTTTAAGGTG
GATATAATGGTGGCACCTGGAACTCATGCAACTGAAGCTGCCGTTAATAA
ACAACTGAACGATAAAGAACGGGTAGCTGCAGCACTAGAAAATCCAAACC
TGGTGGATATGGTTGATGAGTGTTTGGCTCCAACGTTTTGATTGAACATA
CTTTCACTCGTGCAGTTAGAGGCAT
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