CX291671

Overview
NameCX291671
Unique NameCX291671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291671_ssr398 microsatellite CX291671_ssr398:398..418. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291671 vs. ExPASy Swiss-Prot
Match: T10_MOUSE (Ser/Thr-rich protein T10 in DGCR region OS=Mus musculus GN=T10 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 2.436e-13
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  127 MCIAAFIWQAHPL----YPFFLLQNRDEYHQRPTKPVAWW-DSGEILGGRDE---LAGGTWLACSRTGRVAFLTNVLELHTLPEAKSRGD 372
            MCI  F +   P+    Y   L  NRDE++ RP+K   +W ++ EIL G D     AGGTWL  S  G++  LTN L+    P+A+ RG+
Sbjct:    1 MCIIFFKFDPRPVSKNAYRLILAANRDEFYNRPSKLADFWGNNSEILSGLDMEEGKAGGTWLGISTRGKLGALTNYLQPRQEPDARGRGE 90          

HSP 2 Score: 31.9574 bits (71), Expect = 2.436e-13
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 2
Query:  491 MQSTKSPMEFAEELVTEAHQYNGFNLIVADV 583
            + S    + + +++ TE H YNGFN+I AD+
Sbjct:   96 LTSDMDSLSYLKKVSTEGHLYNGFNIIAADL 126          
BLAST of CX291671 vs. ExPASy Swiss-Prot
Match: CV025_BOVIN (Uncharacterized protein C22orf25 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 2.069e-11
Identity = 34/90 (37.78%), Postives = 46/90 (51.11%), Query Frame = 1
Query:  127 MCIAAFIWQAHPL----YPFFLLQNRDEYHQRPTKPVAWWDSG-EILGGRDE---LAGGTWLACSRTGRVAFLTNVLELHTLPEAKSRGD 372
            MCI  F +   P+    Y   L  NRDE++ RP +   +W S  E+L G D      GGTWL  S  G++A LTN L+      A+ RG+
Sbjct:    1 MCIIFFKFDPRPVSKNAYRLILAANRDEFYHRPARAADFWGSNNEVLSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPRLNRNARGRGE 90          

HSP 2 Score: 30.8018 bits (68), Expect = 2.069e-11
Identity = 12/31 (38.71%), Postives = 19/31 (61.29%), Query Frame = 2
Query:  491 MQSTKSPMEFAEELVTEAHQYNGFNLIVADV 583
            + S    + + +++  E H YNGFNLI AD+
Sbjct:   96 LTSDMDSLSYLKKVSAEGHLYNGFNLIAADL 126          
The following BLAST results are available for this feature:
BLAST of CX291671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
T10_MOUSE2.436e-1340.00Ser/Thr-rich protein T10 in DGCR region OS=Mus mus... [more]
CV025_BOVIN2.069e-1137.78Uncharacterized protein C22orf25 homolog OS=Bos ta... [more]
back to top
Properties
Property NameValue
Genbank descriptionC04002A02SK FlavFr1 Citrus clementina cDNA clone C04002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291671 ID=CX291671; Name=CX291671; organism=Citrus clementina; type=EST; length=585bp
AAACAGCTGATGCTTATCTCTATCTCCCTTCTACTCTATTCTTATAATTC
TTGCTAACAGCATTCATTTCAAACATCATAACAAGCAGAACAAATACAAC
TACTCAAAGCTTCGAGGATTTACACAATGTGTATAGCTGCGTTTATATGG
CAAGCCCACCCGCTTTACCCCTTCTTTCTATTGCAAAACCGAGATGAATA
TCACCAGAGGCCTACAAAGCCAGTGGCATGGTGGGATTCTGGTGAAATAT
TGGGCGGGAGAGATGAGCTTGCCGGAGGGACATGGTTAGCTTGTTCAAGA
ACAGGAAGAGTGGCTTTTCTTACCAATGTGTTGGAGCTTCATACTCTCCC
TGAAGCAAAGAGCCGCGGAGACCTACCTGTGCTCTTCTTAGAGGGTTTTC
TTCTTCTTCTTCTTCTTCCTCTTTTCCAATGCTGCAGATCTGCAATCATT
TATACTCTAATTCAGTATTGTCTTCTTCCTGAGAATTTTAATGCAGAGTA
CAAAGAGTCCAATGGAATTTGCGGAGGAGTTGGTGACAGAGGCTCACCAG
TACAATGGATTTAACCTGATTGTAGCTGATGTATC
back to top