CX291675

Overview
NameCX291675
Unique NameCX291675
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15406 contig Ccv1_Contig15406:403..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.341e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 321
            LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  252 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.018e-47
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 321
            L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  248 LRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.053e-44
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 321
            LKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  245 LKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.779e-37
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 303
            L+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  251 LQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.012e-36
Identity = 79/102 (77.45%), Postives = 88/102 (86.27%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 303
            L+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  248 LQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.061e-20
Identity = 49/72 (68.06%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 225
            L S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  242 LVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.532e-19
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 225
            L S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  238 LVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 225
            L S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  245 LVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.773e-18
Identity = 44/84 (52.38%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   16 SIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 267
            S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  252 SAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CX291675 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.194e-17
Identity = 46/85 (54.12%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   10 LKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 264
            L S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  244 LASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CX291675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
THI4_CITSI2.341e-52100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.018e-4790.38Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.053e-4486.54Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE2.779e-3779.59Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.012e-3677.45Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH1.061e-2068.06Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.532e-1966.67Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR4.457e-1963.89Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA3.773e-1852.38Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO3.194e-1754.12Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionC04002A07SK FlavFr1 Citrus clementina cDNA clone C04002A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291675 ID=CX291675; Name=CX291675; organism=Citrus clementina; type=EST; length=425bp
CTCGTGCCGTTGAAGAGTATCGGAATGATTGAGGAAGTGCCTGGAATGAA
GGCACTGGACATGAACTCTGCAGAAGATGCTATTGTGAGGCTGACCAGGG
AGGTTGTGCCTGGTATGATAGTTACCGGCATGGAAGTTGCCGAGATTGAT
GGTGCTCCTAGAATGGGGCCAACATTTGGAGCAATGATGATATCGGGGCA
GAAGGCTGCGCATTTGGCGTTGAAGTCACTGGGCCAGCCGAATGCATTAG
ACGGTACATATGTGGGAGGTGTTCACCCTGAGCTGATCTTAGCTGCAGCT
GATTCTGCTGAGACTGCTGATGGTTAATTTGATAATAACAGGCATCATCA
CTCATCAGCTGTGTGCATGCAAATAAACTCTGGCAAAAAAGTAGTTGTAT
TTAGGTGGTTGTGATGGATGGTTGA
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