CX291685

Overview
NameCX291685
Unique NameCX291685
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291685_ssr222 microsatellite CX291685_ssr222:222..236. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig696 contig Ccv1_Contig696:31..615. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291685 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 8.428e-42
Identity = 94/157 (59.87%), Postives = 113/157 (71.97%), Query Frame = 2
Query:  131 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGSL 577
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNG +
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRI 176          
BLAST of CX291685 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 73/176 (41.48%), Postives = 105/176 (59.66%), Query Frame = 2
Query:   62 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNG 571
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNG
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNG 175          
BLAST of CX291685 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 2
Query:  278 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNG 571
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNG 143          
BLAST of CX291685 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 72/167 (43.11%), Postives = 95/167 (56.89%), Query Frame = 2
Query:   74 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNG 571
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNG 148          
BLAST of CX291685 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.724e-24
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 2
Query:  251 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNG 571
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNG
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNG 207          
BLAST of CX291685 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14
Identity = 53/110 (48.18%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  254 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNG 571
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NG
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNG 150          
The following BLAST results are available for this feature:
BLAST of CX291685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA8.428e-4259.87Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.000e-2641.48Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI6_HORVU9.362e-2555.56Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU1.223e-2443.11Low molecular mass early light-inducible protein H... [more]
ELI5_HORVU2.724e-2454.13High molecular mass early light-inducible protein ... [more]
CBR_DUNBA9.710e-1448.18Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC04002C01SK FlavFr1 Citrus clementina cDNA clone C04002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291685 ID=CX291685; Name=CX291685; organism=Citrus clementina; type=EST; length=585bp
GACCTGAAGCACCCAATTCCCGAATTATACTTTGTTCTGTTTTCTACTTC
ATAAATTAAAAATGGCCGCATCACTTGCTACTCAATCTATGCTGGCAAGT
CCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCGGGGCAAACCAACT
TTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAATGTCAACTTATCCG
TGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCAGAAAGATGATCAA
CCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGAAGCCGCGGATGAG
CACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCCGGCACCGGAGAGGA
TAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGGGTGGAG
ATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGACGGTGGGGTTGC
CTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCGTCCCTGGTTCCTT
TGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATGACTTCG
GATGCTGAGTTGTGGAATGGGAGTTTGCTATGCTG
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