CX291686

Overview
NameCX291686
Unique NameCX291686
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.416e-51
Identity = 96/114 (84.21%), Postives = 104/114 (91.23%), Query Frame = -3
Query:  157 DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDEAGPDNY 498
            D+KREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCHIRGKMHKKVWI AGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+ TRLNEGI AG +D++    ++Y
Sbjct:   21 DDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAGGLDEEMDTANDY 134          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 3.264e-48
Identity = 89/112 (79.46%), Postives = 98/112 (87.50%), Query Frame = -3
Query:  163 DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDEAGPD 498
            D+KREL+FKEDGQEYAQV RMLGNGRCEA+C+DG KRLCHIRGKMHKKVWI AGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP+T RLNEG+     ++ E   D
Sbjct:   21 DDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGVDVDGPEEGEGDSD 132          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 5.963e-42
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = -3
Query:  175 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 495
            EKREL+FKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 5.963e-42
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = -3
Query:  175 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 495
            EKREL+FKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 5.963e-42
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = -3
Query:  175 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 495
            EKREL+FKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.017e-41
Identity = 82/112 (73.21%), Postives = 91/112 (81.25%), Query Frame = -3
Query:  160 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDEAGPDN 495
            EKREL+FKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE   D+
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEVQFDD 133          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 168.703 bits (426), Expect = 1.328e-41
Identity = 81/107 (75.70%), Postives = 89/107 (83.18%), Query Frame = -3
Query:  175 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 495
            EKREL+FKEDGQEYAQV++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 1.735e-41
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = -3
Query:  175 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 495
            EKREL+FKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 1.735e-41
Identity = 80/107 (74.77%), Postives = 89/107 (83.18%), Query Frame = -3
Query:  175 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 495
            EKREL+FKEDGQEYAQV++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 4.725e-39
Identity = 79/107 (73.83%), Postives = 87/107 (81.31%), Query Frame = -3
Query:  175 EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIVDDDE 495
            EKREL+FKEDGQEYAQV++MLGNGR EAM  DG KRL HIRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++NE    G  DDDE
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDE 128          
The following BLAST results are available for this feature:
BLAST of CX291686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF1A_ONOVI1.416e-5184.21Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT3.264e-4879.46Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AX_PONAB5.963e-4276.64Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE5.963e-4276.64Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN5.963e-4276.64Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AY_PANTR1.017e-4173.21Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN1.328e-4175.70Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1A_RAT1.735e-4174.77Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE1.735e-4174.77Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT4.725e-3973.83Eukaryotic translation initiation factor 1A OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC04002C02SK FlavFr1 Citrus clementina cDNA clone C04002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291686 ID=CX291686; Name=CX291686; organism=Citrus clementina; type=EST; length=500bp
TTTTTTTTTAAACAGTAACCCGCTGATATTACATAAAACTAAGCATATCG
ATTTCATCATAAAATTAACAACAAAGAAAGCATGCATGGCATGCAGCAGA
AAAATATAAAAAGAGAAAGATTAGATCCTATCAATATCCTCATCCTCAAA
CTCAATATAATTATCGGGACCAGCTTCATCGTCGTCAACAATACCGGCAG
CAATCCCTTCGTTCAACCTAGTAGTCTCAGGCAATTCACCGTAAGCCTTG
AGCAAGCGGGCCTCATCAGGCATGTATTTCAAAATAACATCGGCTTTATC
GTCTTGATAATCTCTCAAACCGACAAGAATAATATCACCCGCACCAATCC
AAACCTTTTTGTGCATCTTACCACGGATGTGGCAGAGACGCTTGGCGCCG
TCGATGCACATGGCCTCGCATCGACCGTTCCCCAGCATCCGAAGCACCTG
CGCGTATTCTTGACCGTCTTCCTTGAATATCAGCTCGCGTTTCTCGTCGT
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