CX291689

Overview
NameCX291689
Unique NameCX291689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10061 contig Ccv1_Contig10061:30..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 4.697e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
The following BLAST results are available for this feature:
BLAST of CX291689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
H33_VITVI4.697e-4598.91Histone H3.3 OS=Vitis vinifera PE=2 SV=3[more]
H33_TOBAC4.697e-4598.91Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1[more]
H33_PINPS4.697e-4598.91Histone H3.3 OS=Pinus pinaster PE=2 SV=3[more]
H33_ORYSJ4.697e-4598.91Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3... [more]
H33_ORYSI4.697e-4598.91Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H33_ORYCO4.697e-4598.91Histone H3.3 OS=Oryza coarctata PE=2 SV=3[more]
H33_MEDSA4.697e-4598.91Histone H3.3 OS=Medicago sativa PE=1 SV=2[more]
H33_LOLTE4.697e-4598.91Histone H3.3 OS=Lolium temulentum PE=2 SV=2[more]
H33_LOLMU4.697e-4598.91Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=... [more]
H33_GOSHI4.697e-4598.91Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC04002C06SK FlavFr1 Citrus clementina cDNA clone C04002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291689 ID=CX291689; Name=CX291689; organism=Citrus clementina; type=EST; length=326bp
TGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAA
TGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCG
AGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGG
TGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTG
AAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCT
TTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAG
GATCCAAAGCCACGCGGTTCTTGCGC
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