CX293825

Overview
NameCX293825
Unique NameCX293825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9860 contig Ccv1_Contig9860:9..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.120e-40
Identity = 82/101 (81.19%), Postives = 87/101 (86.14%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MSD ++QV           AEDS AG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY+KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG
Sbjct:    1 MSDLEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.186e-39
Identity = 79/101 (78.22%), Postives = 87/101 (86.14%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MS+FD  +           AEDS AG+K+YVH+RVQQRNGRKSLTTVQGLKK++SYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS+FLVQAG
Sbjct:    1 MSEFDNAIPTAFDPFAEANAEDSGAGTKDYVHVRVQQRNGRKSLTTVQGLKKDYSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.548e-39
Identity = 82/101 (81.19%), Postives = 85/101 (84.16%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MS+ D QV           AEDS AG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.548e-39
Identity = 82/101 (81.19%), Postives = 85/101 (84.16%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MS+ D QV           AEDS AG+KEYVHIRVQQRNGRKSLTTVQGLKKE+SY KILKDLKKEFCCNGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG
Sbjct:    1 MSELDSQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.022e-39
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MSD DIQ+           A DS A  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG
Sbjct:    1 MSDLDIQIPTAFDPFSEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAG 103          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.022e-39
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MSD DIQ+           A DS A  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAG 103          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.022e-39
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MSD DIQ+           A DS A  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAG 103          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 7.684e-39
Identity = 81/103 (78.64%), Postives = 86/103 (83.50%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXA--GSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            MSD DIQ+           A DS A  GSK+YVH+R+QQRNGRKSLTTVQGLKKEFSY+KILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVS FLVQAG
Sbjct:    1 MSDLDIQIPTAFDPFAEANAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYSKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAG 103          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.699e-34
Identity = 71/101 (70.30%), Postives = 79/101 (78.22%), Query Frame = 3
Query:  144 MSDFDIQVXXXXXXXXXXKAEDSXAGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            M D DIQ+          +  D+   +KEYVHIR+QQRNGRKSLTTVQGLKKE SY+KILKDLKK  CCNGTVV D ELG+VIQLQGDQRKNVSTF+VQAG
Sbjct:    1 MVDSDIQIPTSFDPFAEAEITDATGSTKEYVHIRIQQRNGRKSLTTVQGLKKELSYDKILKDLKKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAG 101          
BLAST of CX293825 vs. ExPASy Swiss-Prot
Match: EIF1_PONAB (Eukaryotic translation initiation factor 1 OS=Pongo abelii GN=EIF1 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 47/77 (61.04%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  216 AGSKEYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAG 446
            AG+++Y+HIR+QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G
Sbjct:   25 AGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIG 101          
The following BLAST results are available for this feature:
BLAST of CX293825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI12_ARATH3.120e-4081.19Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_SALBA1.186e-3978.22Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI1_BRAOL1.548e-3981.19Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI11_ARATH1.548e-3981.19Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI1_SPOST2.022e-3979.61Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ2.022e-3979.61Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI2.022e-3979.61Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE7.684e-3978.64Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_PIMBR5.699e-3470.30Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1_PONAB6.982e-2461.04Eukaryotic translation initiation factor 1 OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionC05001B05SK FlavSen1 Citrus clementina cDNA clone C05001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293825 ID=CX293825; Name=CX293825; organism=Citrus clementina; type=EST; length=447bp
AGAACGAGCTTCAGACTTATACGAATCCGATTTAGGGTTTCTTTTTGATC
TTATCAGATCGGACTATCTCGATTATTAAACCCTAATCTTCGGATCAGGT
CTGAGCATTCCGGTTGTTGGGCCCCTTGCATCANCTGAGGTTCATGTCTG
ATTTTGATATCCAGGTTCCTGCTGCCTTTGACCCGTTTGCTGATGCAAAG
GCTGAGGACTCANGTGCTGGTTCAAAAGAGTATGTGCATATCCGTGTTCA
GCAACGGAATGGTAGGAAAAGCCTGACAACTGTCCAGGGGTTGAAGAAAG
AATTTAGTTACAACAAAATCCTCAAGGACCTCAAAAAGGAATTTTGCTGC
AATGGAACAGTGGTCCAGGATCCTGAACTAGGACAGGTCATTCAACTCCA
AGGTGACCAGCGGAAGAATGTATCTACGTTCCTTGTTCAGGCTGGGA
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