CX293827

Overview
NameCX293827
Unique NameCX293827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12761 contig Ccv1_Contig12761:1352..1836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 148.673 bits (374), Expect = 1.300e-35
Identity = 78/150 (52.00%), Postives = 101/150 (67.33%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQIL---RAASLDVD----KQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 431
            +GIHW Y   SHA ELTAG+YN   RDGY PIA+MLARH A  NFTC+EMRD EQP +A  AP++LV+QV S+  K ++ +AGENALPRYD  A+ Q+L   R   ++++     +M   TYLR++  L Q DN+  F  FVKKM+   D
Sbjct:  300 SGIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRDSEQPAEAKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLNVRPNGVNLNGPPKLKMSGLTYLRLSDDLLQTDNFELFKKFVKKMHADLD 449          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 7.133e-34
Identity = 77/150 (51.33%), Postives = 95/150 (63.33%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 431
            +GIHW Y   +HA ELTAGYYN   RDGY PIA+ML+RH AI NFTC+EMRD EQP DA   P++LV+QV S   +  + +AGENALPRYD  A+ Q IL A    V+        M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  298 SGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQD 447          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.295e-32
Identity = 74/146 (50.68%), Postives = 96/146 (65.75%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 419
            +GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH  I NFTC+EMRD EQ  DA  AP++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+
Sbjct:  298 SGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHGILNFTCLEMRDSEQSSDAQSAPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLLQESNFEIFKKFVVKMH 443          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.295e-32
Identity = 75/150 (50.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 431
            +GIHW Y + +HA ELTAGYYN   RDGY PIA++++RH AI NFTC+EMRD EQ  DA  +P+KLV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  298 SGIHWWYKAPNHAAELTAGYYNLDDRDGYRPIAKIVSRHHAILNFTCLEMRDSEQSSDAHSSPQKLVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKLRMYGVTYLRLSDDLMQQSNFDIFKKFVVKMHADQD 447          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.914e-32
Identity = 74/150 (49.33%), Postives = 97/150 (64.67%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQ-ILRAASLDVDK------QMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 431
            +GIHW Y +++HA ELTAGYYN   RDGY PIA+M++RH A  NFTC+EMRD EQ  DA   P++LV+QV S   + ++ +AGENAL RYD  A+ Q IL A    V+K      +M   TYLR++  L Q  N+  F  FV KM+  +D
Sbjct:  298 SGIHWWYKAQNHAAELTAGYYNLDDRDGYRPIAKMVSRHHASLNFTCLEMRDSEQSSDAQSGPQELVQQVLSGGWRENIEVAGENALSRYDATAYNQIILNARPQGVNKDGPPKHRMYGVTYLRLSDELLQQSNFDIFKKFVVKMHADQD 447          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.327e-31
Identity = 75/158 (47.47%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKDVHRCLEQV 455
            +GIHW Y   +HA ELTAGYYN   RDGY  IA ML RH A  NFTC EMRD EQ  +A  APE+LV+QV SA  +  + LA ENAL RYD  A+  ILR A       +   + ++  FTYLR++  LFQ  N+  F  FV++M+   D +  ++ V
Sbjct:  295 SGIHWWYNVPNHAAELTAGYYNLDDRDGYRTIAHMLTRHRASMNFTCAEMRDSEQSSEAKSAPEELVQQVLSAGWREGLNLACENALNRYDATAYNTILRNARPQGINKNGPPEHKLHGFTYLRVSDELFQEQNYTTFKTFVRRMHANLDYNPNVDPV 452          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.259e-30
Identity = 73/146 (50.00%), Postives = 91/146 (62.33%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 419
            +GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  295 SGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDSEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.148e-30
Identity = 73/146 (50.00%), Postives = 91/146 (62.33%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 419
            +GIHW Y   SHA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:  295 SGIHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRDLEQSSQAMSAPEELVQQVLSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMH 440          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.066e-29
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAASLD-------VDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMNEGKD 431
            +GIHW Y   SHA ELTAGYYN   RDGY PIA+ML++H  I NFTC+EM+D +   +AL AP++LV++V S   K  + +AGENAL  Y    + QIL  A  +          +M  FTYLR++  +FQ +N+  F   V+KM+  +D
Sbjct:  300 SGIHWLYNHHSHAAELTAGYYNLFKRDGYRPIARMLSKHYGILNFTCLEMKDTDNTAEALSAPQELVQEVLSKAWKEGIEVAGENALETYGAKGYNQILLNARPNGVNPNGKPKLRMYGFTYLRLSDTVFQENNFELFKKLVRKMHADQD 449          
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.392e-29
Identity = 71/146 (48.63%), Postives = 92/146 (63.01%), Query Frame = 3
Query:    3 AGIHWHYGSRSHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 419
            +GIHW Y   +HA ELTAGYYN   RDGY  IA+ML RH A  NFTC EMRD EQ ++A  APE+LV+QV SA  +  + +A ENAL RYD  A+  ILR A       +   + ++  FTYLR++  L +  N+  F  FV+KM+
Sbjct:  295 SGIHWWYRVPNHAAELTAGYYNLDDRDGYRTIARMLTRHHASMNFTCAEMRDSEQSEEAKSAPEELVQQVLSAGWREGLHVACENALGRYDATAYNTILRNARPKGINKNGPPEHKLFGFTYLRLSNELLEGQNYATFQTFVEKMH 440          
The following BLAST results are available for this feature:
BLAST of CX293827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_IPOBA1.300e-3552.00Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_SOYBN7.133e-3451.33Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_TRIRP2.295e-3250.68Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA2.295e-3250.00Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN3.914e-3249.33Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_MAIZE4.327e-3147.47Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_HORSP1.259e-3050.00Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_HORVU2.148e-3050.00Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_ARATH1.066e-2945.33Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
AMYB_WHEAT1.392e-2948.63Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05001B08SK FlavSen1 Citrus clementina cDNA clone C05001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293827 ID=CX293827; Name=CX293827; organism=Citrus clementina; type=EST; length=485bp
TTGCAGGAATCCACTGGCACTATGGGTCTAGGTCCCATGCCCCTGAGCTC
ACAGCTGGATATTACAATACACGATTCCGTGATGGTTACCTCCCTATTGC
CCAGATGCTAGCACGACATGGTGCCATATTCAACTTTACTTGCATAGAGA
TGCGTGATCATGAACAACCACAAGATGCCCTTTGTGCACCTGAGAAGCTA
GTCAAGCAAGTGGCTTCAGCAACTCAAAAAGCACACGTTCCACTGGCTGG
GGAAAATGCGTTGCCACGTTATGATGAATACGCTCACGAGCAGATCTTGC
GAGCAGCATCACTTGATGTAGACAAACAGATGTGTGCATTCACGTACTTG
AGGATGAATCCACATTTATTCCAACCCGATAATTGGAGACAGTTTGTGGC
ATTTGTGAAGAAGATGAATGAAGGGAAGGATGTTCACCGGTGTTTGGAGC
AAGTGGAGCGCGAAGCTGAGCACTTCGTCCATGTG
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