CX293828

Overview
NameCX293828
Unique NameCX293828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293828 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.506e-27
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 2
Query:    2 AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 343
            A+APPLVAVV+NQLYA ++    V+KYDK    W  +GRLP RA   NGWGLAF+ACG  L+V+GG +   G  + LNSW P  G   G   W +L +++H   FVYNCAV+GC
Sbjct:  358 AEAPPLVAVVNNQLYAADHADMEVRKYDKENKKWLTVGRLPERAGSVNGWGLAFRACGERLIVIGGPKCSGGGFIELNSWIPSDG---GPPQWTLL-DRKHSPTFVYNCAVMGC 467          
BLAST of CX293828 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.382e-27
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 2
Query:    2 AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 343
            ++APPLVAVV ++LYA  Y    VKKYDK  N W+ +G LP RA   NGWG+AF+ACG++L+VVGG R   G  + +N+  P  G     L W+VLA K   G FVYNCAV+GC
Sbjct:  342 SEAPPLVAVVKDELYAANYAQQEVKKYDKRLNVWNKVGNLPERASSMNGWGMAFRACGDQLVVVGGPRAIGGGFIEINACVPSEGTQ---LHWRVLASKPS-GNFVYNCAVMGC 451          
BLAST of CX293828 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.409e-25
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 2
Query:    2 AQAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGPEGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGVFVYNCAVLGC 343
            A APPLVAVV++QLYA ++    V++YDK K  W+ +G LP +A   NGWGLAF+ACG+ ++V+GG + P    + LNSW P    +  T +W +L +KQ V  FVYNCAV+ C
Sbjct:  313 AMAPPLVAVVNDQLYAADHAGMAVRRYDKEKRVWNKVGNLPEQAGSMNGWGLAFRACGDRIIVIGGPKAPGEGFIELNSWVP----SVTTPEWHLLGKKQSVN-FVYNCAVMSC 421          
BLAST of CX293828 vs. ExPASy Swiss-Prot
Match: FBK70_ARATH (F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.571e-15
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 2
Query:    5 QAPPLVAVVDNQLYAVEYLTNMVKKYDKLKNTWDVLGRLPVRADLSNGWGLAFKACGNELLVVGGQRGP-EGENVVLNSWCPKSGVNNGTLDWKVLAEKQHVGV----FVYNCAVL 337
            Q+PPL+AVV + LY++E   N ++ YD   N+W  LG +PVRA  + GWG+AFK+ G++LLV+G   GP   E + + +  P +   N  L W+    K+  GV    F+ NC V+
Sbjct:  308 QSPPLIAVVGDDLYSLETSANELRVYDANANSWKKLGDVPVRAKSNGGWGVAFKSLGDKLLVIGASAGPSRAETMSVYTSRPSANPAN-KLYWE--ESKRCCGVRFNHFILNCCVM 420          
The following BLAST results are available for this feature:
BLAST of CX293828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKI11_ARATH1.506e-2752.63F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK29_ARATH4.382e-2752.63F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
FBK15_ARATH1.409e-2549.12F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK70_ARATH8.571e-1539.66F-box/kelch-repeat protein At3g27150 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC05001B09SK FlavSen1 Citrus clementina cDNA clone C05001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293828 ID=CX293828; Name=CX293828; organism=Citrus clementina; type=EST; length=579bp
TGCACAGGCTCCTCCTCTCGTTGCAGTTGTGGATAATCAGTTATATGCAG
TTGAGTATTTGACTAACATGGTCAAGAAGTATGACAAGTTGAAGAACACG
TGGGATGTGTTGGGAAGGCTTCCAGTTAGAGCTGATCTCTCAAATGGCTG
GGGTCTGGCCTTTAAAGCTTGTGGAAATGAACTTCTGGTTGTGGGTGGGC
AAAGAGGCCCCGAAGGTGAAAATGTTGTGCTAAACTCGTGGTGTCCCAAG
TCAGGGGTTAACAACGGAACCTTGGATTGGAAGGTACTTGCTGAGAAGCA
GCATGTCGGAGTGTTCGTCTACAACTGTGCCGTCTTGGGTTGTTGATAGT
TCTCTTGAGATTTGACCTAATGGATGGTTTGAGCATCTCCAATCTGACAT
GGCCCTTTAAGGTGCTTCCCTGCACATTTGTCCAATTGACTAAAATTAAT
TGTTGATGATGAGCTAGAGTTTCGCAATCTGTGAATTTGATTACATTTCT
TTTAACTTGTCTGTATTTCGAAGTGTTTTTCACTTCCCGATTCTGCAATT
TATTATCTGCTTTCACTTAAAAAAAAAAA
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