CX293836

Overview
NameCX293836
Unique NameCX293836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig354 contig Ccv1_Contig354:549..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293836 vs. ExPASy Swiss-Prot
Match: CMTA2_ARATH (Calmodulin-binding transcription activator 2 OS=Arabidopsis thaliana GN=CMTA2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.102e-35
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1
Query:    1 IIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRLLTVVEGSRETKESN 291
            IIWSVG+LEK+ILRWRRKGSGLRGF+RD +     P     +EDDYDFLK+GRKQTEERLQKAL RVKSM QYPEARAQYRRLLTVVEG RE + S+
Sbjct:  916 IIWSVGLLEKIILRWRRKGSGLRGFKRDTISKPTEPVCPAPQEDDYDFLKEGRKQTEERLQKALTRVKSMAQYPEARAQYRRLLTVVEGFRENEASS 1012          
BLAST of CX293836 vs. ExPASy Swiss-Prot
Match: CMTA1_ARATH (Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 7.476e-33
Identity = 70/105 (66.67%), Postives = 85/105 (80.95%), Query Frame = 1
Query:    1 IIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQ--------HVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRLLTVVEGSRETKESN 291
            +IWSVG+LEK+ILRWRRKG+GLRGF+R+A+     P+         +P +ED+YD+LK+GRKQTEERLQKAL RVKSMVQYPEAR QYRRLLTVVEG RE + S+
Sbjct:  867 VIWSVGLLEKIILRWRRKGNGLRGFKRNAVAKTVEPEPPVSAICPRIP-QEDEYDYLKEGRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVVEGFRENEASS 970          
BLAST of CX293836 vs. ExPASy Swiss-Prot
Match: CMTA3_ARATH (Calmodulin-binding transcription activator 3 OS=Arabidopsis thaliana GN=CMTA3 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.014e-29
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 1
Query:    1 IIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRLLTVVEGSRETKESNMVPN 303
            IIWSVG+LEKVILRWRRKG+GLRGF+ +AL      Q    KE+D DF K GRKQTE+RLQKAL RVKSMVQYPEAR QYRRLL VV   +E+K    + N
Sbjct:  898 IIWSVGVLEKVILRWRRKGAGLRGFKSEALV--EKMQDGTEKEEDDDFFKQGRKQTEDRLQKALARVKSMVQYPEARDQYRRLLNVVNDIQESKVEKALEN 996          
BLAST of CX293836 vs. ExPASy Swiss-Prot
Match: CMTA4_ARATH (Calmodulin-binding transcription activator 4 OS=Arabidopsis thaliana GN=CMTA4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.265e-12
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 IIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQ-TEERLQKALGRVKSMVQYPEARAQYRRLL 252
            I W+V IL+KV+LRWRRKG GLRGFR+D      +        +D D LK  RKQ  +  + +A  RV SM   PEAR QY R+L
Sbjct:  901 ICWAVRILDKVVLRWRRKGVGLRGFRQDVESTEDS--------EDEDILKVFRKQKVDVAVNEAFSRVLSMSNSPEARQQYHRVL 977          
BLAST of CX293836 vs. ExPASy Swiss-Prot
Match: CMTA6_ARATH (Calmodulin-binding transcription activator 6 OS=Arabidopsis thaliana GN=CMTA6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1
Query:    1 IIWSVGILEKVILRWRRKGSGLRGFRRDALGMNPNPQHVPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYRRL 249
            I+WSVG+LEK +LRWR+K  G RG +  A   +P        E   DF K  ++Q EERL++++ RV++M +  +A+  YRR+
Sbjct:  736 ILWSVGVLEKAVLRWRQKRKGFRGLQVAAEEDSPG-------EAQEDFYKTSQRQAEERLERSVVRVQAMFRSKKAQQDYRRM 811          
The following BLAST results are available for this feature:
BLAST of CX293836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CMTA2_ARATH2.102e-3575.26Calmodulin-binding transcription activator 2 OS=Ar... [more]
CMTA1_ARATH7.476e-3366.67Calmodulin-binding transcription activator 1 OS=Ar... [more]
CMTA3_ARATH5.014e-2966.34Calmodulin-binding transcription activator 3 OS=Ar... [more]
CMTA4_ARATH3.265e-1248.24Calmodulin-binding transcription activator 4 OS=Ar... [more]
CMTA6_ARATH3.610e-1140.96Calmodulin-binding transcription activator 6 OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05001D03SK FlavSen1 Citrus clementina cDNA clone C05001D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293836 ID=CX293836; Name=CX293836; organism=Citrus clementina; type=EST; length=431bp
ATCATCTGGTCAGTTGGAATCCTGGAAAAGGTCATTTTGCGCTGGAGACG
TAAAGGCAGCGGTTTGCGTGGATTCCGACGTGATGCTCTCGGTATGAATC
CTAATCCACAACATGTGCCATTGAAGGAAGACGATTATGATTTTTTAAAG
GATGGAAGGAAACAAACTGAAGAAAGGTTGCAAAAGGCACTTGGCAGAGT
GAAGTCCATGGTTCAGTATCCTGAGGCACGAGCTCAGTACCGTAGGTTGC
TGACCGTTGTCGAAGGTTCCCGTGAAACCAAGGAGTCCAATATGGTTCCA
AATGGCTTGGAAGATATAGCTGATGGAGACCTCGATCTGATTGATATTGA
CTCACTTTTGGATGATGACACCTTCATGTCTGTGGCATTTGAATGAGCCT
GTAATTCACCAATTTTTACCTTCCTGTACAT
back to top