CX293844

Overview
NameCX293844
Unique NameCX293844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig123 contig Ccv1_Contig123:257..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.193e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:   65 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.193e-32
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:   65 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 3.473e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFG+IVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:   65 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.010e-31
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVISPRFDVGVKEIE WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY
Sbjct:   65 LNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.117e-30
Identity = 61/66 (92.42%), Postives = 65/66 (98.48%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLN CGVISPR+D+GVKEIEGWTA+LLPSRQFGYIVLTTSAGIMDHEEAR+KNVGGKVLGFFY
Sbjct:   65 LNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_STRPU (40S ribosomal protein S15a OS=Strongylocentrotus purpuratus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 4.393e-27
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVISPRFDV + E+E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+VGGK+LGFF+
Sbjct:   65 LNGRLNKCGVISPRFDVPINEMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_PARLI (40S ribosomal protein S15a OS=Paracentrotus lividus GN=RPS15A PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.786e-27
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVISPRFDV + ++E WT+ LLPSRQFGY+VLTTS GIMDHEEARRK+VGGK+LGFF+
Sbjct:   65 LNGRLNKCGVISPRFDVPINDMEKWTSNLLPSRQFGYVVLTTSGGIMDHEEARRKHVGGKILGFFF 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.082e-25
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:   65 LTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.082e-25
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            L GRLNKCGVISPRFDV + +IE WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct:   65 LTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFFF 130          
BLAST of CX293844 vs. ExPASy Swiss-Prot
Match: RS22_CANGA (40S ribosomal protein S22 OS=Candida glabrata GN=RPS22 PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.413e-25
Identity = 52/66 (78.79%), Postives = 60/66 (90.91%), Query Frame = 2
Query:    2 LNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 199
            LNGRLNKCGVISPRF+V + +IE WTA LLP+RQFGY++LTTSAGIMDHEEARRK+V GK+LGF Y
Sbjct:   65 LNGRLNKCGVISPRFNVKIGDIEKWTANLLPARQFGYVILTTSAGIMDHEEARRKHVSGKILGFVY 130          
The following BLAST results are available for this feature:
BLAST of CX293844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS15A_BRANA1.193e-32100.0040S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A1_ARATH1.193e-32100.0040S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
R15A4_ARATH3.473e-3298.4840S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
RS15A_DAUCA1.010e-3198.4840S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
R15A3_ARATH1.117e-3092.4240S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS15A_STRPU4.393e-2781.8240S ribosomal protein S15a OS=Strongylocentrotus p... [more]
RS15A_PARLI9.786e-2780.3040S ribosomal protein S15a OS=Paracentrotus lividu... [more]
RS15A_DROYA1.082e-2578.7940S ribosomal protein S15a OS=Drosophila yakuba GN... [more]
RS15A_DROME1.082e-2578.7940S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS22_CANGA1.413e-2578.7940S ribosomal protein S22 OS=Candida glabrata GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC05001E07SK FlavSen1 Citrus clementina cDNA clone C05001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293844 ID=CX293844; Name=CX293844; organism=Citrus clementina; type=EST; length=409bp
GCTGAATGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGATG
TTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAGA
CAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACGA
AGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTACT
AGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTTTTTGTGTACTTTG
GAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTTA
ATTATGCATTTTTAAACTCGGATTGGTACTTTTTAGTTGAAGAAAGATGA
TATTATGTGTTACACACATTTATCTCTTAGCAGTTGAAAAAAAAAAAAAA
AAAAAAAAA
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