CX293847

Overview
NameCX293847
Unique NameCX293847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 6.726e-70
Identity = 124/180 (68.89%), Postives = 141/180 (78.33%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMES 558
            ++VFLHAVMAKKRKMQ+RCRDMEWWM            V  +ERQRW  +GGEDE+ELI DLP GLRR IKRYLC DLI KVPLF           CDR +P V+SKDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATF C+E+
Sbjct:  448 IQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLEN 627          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 3.837e-49
Identity = 91/180 (50.56%), Postives = 123/180 (68.33%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMES 558
            +KVFLHA  +KK+ M L+ R++EWWM            V +YERQRWA M G DE E++++LPEGLRR IK +LCLDL+++VPLF           CDRV+ L+++K E I +EGD V RM+F+VRG ++  Q L  G+ +  +L PG F GDELLSWCLRRPF++RLP SS+T   +E+
Sbjct:  413 IKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLET 592          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28
Identity = 63/173 (36.42%), Postives = 95/173 (54.91%), Query Frame = 1
Query:   28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            +L +   ++ +M++R RD E WM            +  YE+ RW    G +E  L+++LP+ LRR IKR+LCLDL+KKVPLF           CDR+RP++Y+++  +IREGDPV  M+F++RGR+    +     G      L+   F G++LL W L        P S+ T
Sbjct:  393 YLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRT 565          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.369e-28
Identity = 61/176 (34.66%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L ++  +  +M+++ RD E WM            V  Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P +Y++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T
Sbjct:  430 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRT 605          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 8.318e-28
Identity = 61/176 (34.66%), Postives = 101/176 (57.39%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L ++  +  +M+++ RD E WM            V  Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F GDELL+W L       LP+S+ T
Sbjct:  431 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRT 606          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27
Identity = 60/176 (34.09%), Postives = 100/176 (56.82%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L ++  +  +M+++ RD E WM            V  Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P +Y++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T
Sbjct:  425 MQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRT 600          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27
Identity = 59/173 (34.10%), Postives = 95/173 (54.91%), Query Frame = 1
Query:   28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            +L +   ++ +M++R RD E WM            +  YE+ +W    G +E  L+++LP+ LRR IKR+ CLDL+KKVPLF           CD+++P++Y+++   IREGDPV  M+F++RG++    +     G      L+P  F G++LL+W L        P S+ T
Sbjct:  394 YLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRT 566          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27
Identity = 59/176 (33.52%), Postives = 100/176 (56.82%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L ++  +  +M+++ RD E WM            V  Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P ++++   I+REGDPV  M+FI+RGR++   +     G     +L+ G F G+ELL+W L       LP+S+ T
Sbjct:  419 MQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRT 594          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.196e-27
Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L +   +  +M+++ RD E WM            +  YE+ +W    G DE  L+ +LP+ LRR IKR+LCL L+ +VP+F           CDR++P++Y+++  I+REGDPV  M+FI+RG++    +     G + +  L  G F G+ELL+W L       LP S+ T
Sbjct:  403 MQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRT 578          
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.564e-26
Identity = 60/176 (34.09%), Postives = 100/176 (56.82%), Query Frame = 1
Query:   19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540
            ++ +L ++  +  +M+++ RD E WM            V  Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C R++P ++++   ++REGDPV  M+FI+RGR++   +     G    S+L+ G F G+ELL+W L       LP+S+ T
Sbjct:  415 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRT 590          
The following BLAST results are available for this feature:
BLAST of CX293847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC2_ARATH6.726e-7068.89Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH3.837e-4950.56Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG10_ARATH4.876e-2836.42Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC9_ARATH6.369e-2834.66Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC6_ARATH8.318e-2834.66Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC8_ARATH1.853e-2734.09Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNG13_ARATH2.420e-2734.10Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC7_ARATH5.391e-2733.52Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC1_ARATH9.196e-2734.09Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC5_ARATH4.564e-2634.09Probable cyclic nucleotide-gated ion channel 5 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05001E10SK FlavSen1 Citrus clementina cDNA clone C05001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293847 ID=CX293847; Name=CX293847; organism=Citrus clementina; type=EST; length=558bp
GCACGAGGTGCTGTTGCTGTGAAGGTGTTTTTGCATGCTGTAATGGCAAA
GAAGCGAAAGATGCAGCTGAGGTGCCGAGACATGGAATGGTGGATGAGAC
GGAGGCAGCTGCCGTCGCGTTTGAGACAGAGAGTTCACCATTATGAGCGT
CAAAGATGGGCAACAATGGGAGGAGAAGATGAGATGGAACTGATCAAAGA
CTTGCCGGAAGGGCTGAGGCGTGGCATTAAACGGTATCTCTGCCTTGATC
TTATAAAAAAGGTACCTTTGTTCCACAACCTGGATGATCTCATTCTTGAC
AACATATGTGACAGAGTTAGGCCCCTTGTATACTCTAAAGATGAAAAGAT
AATCAGAGAAGGGGATCCTGTGCCAAGAATGGTGTTCATTGTTCGTGGAC
GGATTAAACGTTGCCAAAGCCTAAGCAAAGGCATGGTAGCAACAAGTGTG
CTTGAACCAGGAGGGTTTCTGGGTGATGAGTTGCTTTCCTGGTGCCTGCG
CCGCCCGTTTATCGATCGGCTGCCAGCATCATCAGCAACATTTTTTTGTA
TGGAATCC
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