CX293847
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 263.077 bits (671), Expect = 6.726e-70 Identity = 124/180 (68.89%), Postives = 141/180 (78.33%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMES 558 ++VFLHAVMAKKRKMQ+RCRDMEWWM V +ERQRW +GGEDE+ELI DLP GLRR IKRYLC DLI KVPLF CDR +P V+SKDEKIIREGDPV RM+FI+RGR+KR QSLSKG++ATS LEPGG+LGDELLSWCLRRPF+DRLP SSATF C+E+ Sbjct: 448 IQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVKRIQSLSKGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLEN 627
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 194.126 bits (492), Expect = 3.837e-49 Identity = 91/180 (50.56%), Postives = 123/180 (68.33%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFFCMES 558 +KVFLHA +KK+ M L+ R++EWWM V +YERQRWA M G DE E++++LPEGLRR IK +LCLDL+++VPLF CDRV+ L+++K E I +EGD V RM+F+VRG ++ Q L G+ + +L PG F GDELLSWCLRRPF++RLP SS+T +E+ Sbjct: 413 IKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQSSQLLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLET 592
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 4.876e-28 Identity = 63/173 (36.42%), Postives = 95/173 (54.91%), Query Frame = 1 Query: 28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 +L + ++ +M++R RD E WM + YE+ RW G +E L+++LP+ LRR IKR+LCLDL+KKVPLF CDR+RP++Y+++ +IREGDPV M+F++RGR+ + G L+ F G++LL W L P S+ T Sbjct: 393 YLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRT 565
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 6.369e-28 Identity = 61/176 (34.66%), Postives = 101/176 (57.39%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L ++ + +M+++ RD E WM V Y++ +W G DE L+++LP+ LRR IKR+LCL L+++VPLF C+R++P +Y++ ++REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T Sbjct: 430 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRT 605
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 8.318e-28 Identity = 61/176 (34.66%), Postives = 101/176 (57.39%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L ++ + +M+++ RD E WM V Y++ +W G DE L+++LP+ LRR IKR+LCL L+++VPLF C+R++P ++++ ++REGDPV M+FI+RGR++ + G S+L+ G F GDELL+W L LP+S+ T Sbjct: 431 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRT 606
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 122.094 bits (305), Expect = 1.853e-27 Identity = 60/176 (34.09%), Postives = 100/176 (56.82%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L ++ + +M+++ RD E WM V Y++ +W G DE +++ LP+ LRR IKR+LCL+L+++VPLF C+R++P +Y++ I+REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T Sbjct: 425 MQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRT 600
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27 Identity = 59/173 (34.10%), Postives = 95/173 (54.91%), Query Frame = 1 Query: 28 FLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 +L + ++ +M++R RD E WM + YE+ +W G +E L+++LP+ LRR IKR+ CLDL+KKVPLF CD+++P++Y+++ IREGDPV M+F++RG++ + G L+P F G++LL+W L P S+ T Sbjct: 394 YLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKPSDFCGEDLLTWALDPQSSSHFPISTRT 566
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.391e-27 Identity = 59/176 (33.52%), Postives = 100/176 (56.82%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L ++ + +M+++ RD E WM V Y++ +W G DE +++ LP+ LRR IKR+LCL+L+++VPLF C+R++P ++++ I+REGDPV M+FI+RGR++ + G +L+ G F G+ELL+W L LP+S+ T Sbjct: 419 MQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRT 594
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 9.196e-27 Identity = 60/176 (34.09%), Postives = 97/176 (55.11%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L + + +M+++ RD E WM + YE+ +W G DE L+ +LP+ LRR IKR+LCL L+ +VP+F CDR++P++Y+++ I+REGDPV M+FI+RG++ + G + + L G F G+ELL+W L LP S+ T Sbjct: 403 MQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRT 578
BLAST of CX293847 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 4.564e-26 Identity = 60/176 (34.09%), Postives = 100/176 (56.82%), Query Frame = 1 Query: 19 VKVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXVHHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS--KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSAT 540 ++ +L ++ + +M+++ RD E WM V Y++ +W G DE L+++LP+ LRR IKR+LCL L+++VPLF C R++P ++++ ++REGDPV M+FI+RGR++ + G S+L+ G F G+ELL+W L LP+S+ T Sbjct: 415 MQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRT 590 The following BLAST results are available for this feature:
BLAST of CX293847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293847 ID=CX293847; Name=CX293847; organism=Citrus clementina; type=EST; length=558bpback to top |