CX293849

Overview
NameCX293849
Unique NameCX293849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length388
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14223 contig Ccv1_Contig14223:480..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293849 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.904e-14
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:    8 SLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 157
            SL+P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:  147 SLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196
[Close]
BLAST of CX293849 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.591e-13
Identity = 31/50 (62.00%), Postives = 44/50 (88.00%), Query Frame = 2 
Query:    8 SLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 157
            +L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:  148 TLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197
[Close]
BLAST of CX293849 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:    8 SLVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 157
            SL+PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  180 SLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229
The following BLAST results are available for this feature:
BLAST of CX293849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELI_PEA1.904e-1474.00Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL3.591e-1362.00Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU8.000e-1368.00High molecular mass early light-inducible protein ... [more]
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Properties
Property NameValue
Genbank descriptionC05001F02SK FlavSen1 Citrus clementina cDNA clone C05001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293849 ID=CX293849; Name=CX293849; organism=Citrus clementina; type=EST; length=388bp
ACGAGGGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAAT
CGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGTTCGCT
ATGATGGGTCTTGTTGCTTTGGCTGTCACTGAGTTTGTTAAAGGCAGTAC
CCTTGTTTAGTTAAGTCCAATTTTCCAGTGATATGCGGACTGCAGAGTCT
TGAAATGATAACAAGACCCTATTCTTAATACTTGAAGCGCACGTCATGTT
TCTTCCGTGGCTAATTATTGTGTATGAATTATGGTGGCGCTGTATGTAAA
TCTCTGTTTTCCCATGCCAATTCTCTAAATAAATCACCCTTTTCCGTTTA
AAAAACAAAAAAAAAAAAACTCGAGGGGGGGCCCGGTA
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