CX293852

Overview
NameCX293852
Unique NameCX293852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1919 contig Ccv1_Contig1919:56..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC3_ARATH (Probable cytochrome c At4g10040 OS=Arabidopsis thaliana GN=At4g10040 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.594e-59
Identity = 106/112 (94.64%), Postives = 109/112 (97.32%), Query Frame = 3
Query:   30 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            MASFDEAPPGN KAGEKIF+TKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTP YSYSAANK+MAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+ TA
Sbjct:    1 MASFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKSMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_ABUTH (Cytochrome c OS=Abutilon theophrasti PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 3.626e-58
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASF +APPG+AKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTP YSYSAANKNMAVNW E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFQZAPPGBAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_CUCMA (Cytochrome c OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.378e-57
Identity = 104/111 (93.69%), Postives = 108/111 (97.30%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTTP YSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_SAMNI (Cytochrome c OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.069e-57
Identity = 105/111 (94.59%), Postives = 106/111 (95.50%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASF EAPPGN KAGEKIFKTKC QCHTV+KGAGHKQGPNLNGLFGRQSGTT  YSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA
Sbjct:    1 ASFAEAPPGNPKAGEKIFKTKCNQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_BRAOL (Cytochrome c OS=Brassica oleracea PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.235e-57
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT  YSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_BRANA (Cytochrome c OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.235e-57
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASFDEAPPGN+KAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT  YSYSAANKN AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC2_ARATH (Probable cytochrome c At1g22840 OS=Arabidopsis thaliana GN=At1g22840 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.235e-57
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 3
Query:   30 MASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            MASFDEAPPGNAKAGEKIF+TKCAQCHTVE GAGHKQGPNLNGLFGRQSGTT  YSYSAANKN AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 MASFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_PHAAU (Cytochrome c OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 6.838e-57
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASFDEAPPGN+K+GEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT  YSYS ANKNMAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_RICCO (Cytochrome c OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.393e-56
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASF++APPG+ KAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTT  YSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK++TA
Sbjct:    1 ASFBZAPPGBVKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZATA 111          
BLAST of CX293852 vs. ExPASy Swiss-Prot
Match: CYC_GOSBA (Cytochrome c OS=Gossypium barbadense PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 3.393e-56
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 3
Query:   33 ASFDEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPVYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 365
            ASF +APPG+AKAGEKIFKTKCAQCHTV+KGAGHKQGPNLNGLFGRQSGTT  YSYSAANKNMAV W E TLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK+STA
Sbjct:    1 ASFQZAPPGBAKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANKNMAVQWGENTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKZSTA 111          
The following BLAST results are available for this feature:
BLAST of CX293852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
CYC3_ARATH5.594e-5994.64Probable cytochrome c At4g10040 OS=Arabidopsis tha... [more]
CYC_ABUTH3.626e-5893.69Cytochrome c OS=Abutilon theophrasti PE=1 SV=1[more]
CYC_CUCMA1.378e-5793.69Cytochrome c OS=Cucurbita maxima PE=1 SV=1[more]
CYC_SAMNI3.069e-5794.59Cytochrome c OS=Sambucus nigra PE=1 SV=1[more]
CYC_BRAOL5.235e-5792.79Cytochrome c OS=Brassica oleracea PE=1 SV=1[more]
CYC_BRANA5.235e-5792.79Cytochrome c OS=Brassica napus PE=1 SV=1[more]
CYC2_ARATH5.235e-5792.86Probable cytochrome c At1g22840 OS=Arabidopsis tha... [more]
CYC_PHAAU6.838e-5792.79Cytochrome c OS=Phaseolus aureus PE=1 SV=1[more]
CYC_RICCO3.393e-5690.09Cytochrome c OS=Ricinus communis PE=1 SV=1[more]
CYC_GOSBA3.393e-5690.99Cytochrome c OS=Gossypium barbadense PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05001F05SK FlavSen1 Citrus clementina cDNA clone C05001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293852 ID=CX293852; Name=CX293852; organism=Citrus clementina; type=EST; length=422bp
CTCTTTGGATCTTTCAAAACACCACAATAATGGCGTCGTTTGATGAGGCA
CCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTCAAGACCAAGTGCGC
TCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAAACAAGGTCCTAATT
TGAACGGATTGTTTGGAAGGCAATCGGGGACTACACCTGTGTACTCATAC
TCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAGGAAAAGACTTTGTA
TGATTACTTGCTCAACCCTAAGAAGTACATTCCTGGAACAAAGATGGTAT
TCCCTGGATTGAAGAAGCCTCAGGATCGCGCTGACCTTATTGCATATTTG
AAACAATCTACTGCATAAGAACTTGCCGATAGTCAGTTTACCTATTCCAT
TTTGCAGTTGTTGAAGATTGTT
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