CX293861
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.323e-46 Identity = 90/149 (60.40%), Postives = 109/149 (73.15%), Query Frame = 3 Query: 3 ERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN--------------GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDR 407 ERV+ K ++ P+LS DGMNGY++PC+G+ HPPVFRSP+ MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GRRP N GR NP G++SGR LG AAHRLV+NSLQ M DR Sbjct: 733 ERVDFKVKIKPKLS---DGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR 877
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25 Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 3 Query: 3 ERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD--AHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 386 ER + E+++P LS DGMNGYI+ C GD P F S V MED++ NQV+CAIYKLP+ +T + PKK + L DLK +LWHED +R + R+NP G+ISG +LG+A+HRLV ++ Sbjct: 725 ERATIIEKIDPGLS---DGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17 Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 3 Query: 51 SDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK---------VDRNGY 416 S GMNG++ + SPV + I N+ L Y P H H++ PP G I P KI+ D+KP P LWHED S RR R G I+G LGEAAHRL+ N+L +MK +D NGY Sbjct: 650 SQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGLIDPNGY 780
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: CR2_HORVU (Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13 Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 3 Query: 3 ERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYK 173 +R E+KE+L+P S GMNGYIS C GDP P VFRSPV +EDIM NQV+C+IYK Sbjct: 23 DRNEIKEQLDPS---ASGGMNGYISLCGGDPSPLVFRSPVDGLEDIMDNQVICSIYK 76 The following BLAST results are available for this feature:
BLAST of CX293861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX293861 ID=CX293861; Name=CX293861; organism=Citrus clementina; type=EST; length=630bpback to top |