CX293861

Overview
NameCX293861
Unique NameCX293861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig520 contig Ccv1_Contig520:1..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.323e-46
Identity = 90/149 (60.40%), Postives = 109/149 (73.15%), Query Frame = 3
Query:    3 ERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHEN--------------GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDR 407
            ERV+ K ++ P+LS   DGMNGY++PC+G+ HPPVFRSP+  MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LWHED+GRRP  N              GR NP G++SGR LG AAHRLV+NSLQ M  DR
Sbjct:  733 ERVDFKVKIKPKLS---DGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR 877          
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 3
Query:    3 ERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD--AHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 386
            ER  + E+++P LS   DGMNGYI+ C GD  P  F S V  MED++ NQV+CAIYKLP+      +T     +  PKK + L DLK   +LWHED  +R       +  R+NP G+ISG +LG+A+HRLV  ++
Sbjct:  725 ERATIIEKIDPGLS---DGMNGYIASCGGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKSGGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856          
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 3
Query:   51 SDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK---------VDRNGY 416
            S GMNG++     +       SPV  +  I  N+ L   Y  P  H H++ PP G I P KI+   D+KP P LWHED S RR     R    G I+G  LGEAAHRL+ N+L +MK         +D NGY
Sbjct:  650 SQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGLIDPNGY 780          
BLAST of CX293861 vs. ExPASy Swiss-Prot
Match: CR2_HORVU (Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 36/57 (63.16%), Postives = 43/57 (75.44%), Query Frame = 3
Query:    3 ERVEVKERLNPELSMCSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYK 173
            +R E+KE+L+P     S GMNGYIS C GDP P VFRSPV  +EDIM NQV+C+IYK
Sbjct:   23 DRNEIKEQLDPS---ASGGMNGYISLCGGDPSPLVFRSPVDGLEDIMDNQVICSIYK 76          
The following BLAST results are available for this feature:
BLAST of CX293861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
XRN3_ARATH1.323e-4660.405'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
XRN2_ARATH6.387e-2545.195'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN... [more]
XRN4_ARATH3.753e-1740.915'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
CR2_HORVU4.294e-1363.16Cold-regulated protein 2 (Fragment) OS=Hordeum vul... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05001G06SK FlavSen1 Citrus clementina cDNA clone C05001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293861 ID=CX293861; Name=CX293861; organism=Citrus clementina; type=EST; length=630bp
AAGAGCGAGTTGAAGTTAAGGAGCGTCTCAATCCCGAGTTAAGTATGTGC
AGCGATGGGATGAACGGTTACATATCCCCTTGTGCTGGCGATCCTCATCC
CCCTGTATTTAGATCTCCTGTCGCAAGCATGGAAGATATCATGGGCAACC
AAGTCTTATGTGCTATATACAAACTTCCAGATGCACATAAGCACGTTACC
AGGCCTCCTGCCGGAGTTATATTTCCAAAAAAGATAGTGCAATTGGAGGA
TCTGAAACCTGCACCTGTATTGTGGCATGAAGATTCTGGAAGGAGGCCTC
ATGAAAATGGAAGACATAATCCCCATGGAACTATTTCTGGCCGTCAGCTC
GGGGAGGCAGCGCACAGACTAGTTGCTAATAGTTTACAGCACATGAAAGT
GGATCGTAATGGGTATGGTGATCGTATGCATGGTTCACCGCTACCTTATG
CTGCGGCCCCGTATGTCCCTCCAGTTCCTTCCTATCAAGAATATGGGGTT
TATGATCAAGGATATAATAGATTCTCGCAGCCAAGAACAGATAGCTATCC
TGCAGGGCATTCCCAATCGTCTATTTCTGCTGCACAACCTCCCTATGATG
GTGGGTATAGTCAACACTATGCTTCAAATA
back to top