CX293866

Overview
NameCX293866
Unique NameCX293866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX293866_ssr1 microsatellite CX293866_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CATR_ATRNU (Caltractin OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 7.278e-42
Identity = 82/104 (78.85%), Postives = 93/104 (89.42%), Query Frame = -2
Query:  309 NQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFGY 620
            NQMIADVDKDGSGAID DEF HMMTAKIGERD+KEELMKAF IIDQDNNGKIS  DI+RIA+ELG NFT ++I +M+EEADRD DGEVN +EF+RMMKRT++ Y
Sbjct:   64 NQMIADVDKDGSGAIDFDEFCHMMTAKIGERDTKEELMKAFRIIDQDNNGKISPEDIQRIAKELGENFTVKDIQDMIEEADRDRDGEVNVEEFLRMMKRTSYAY 167          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CML20_ARATH (Probable calcium-binding protein CML20 OS=Arabidopsis thaliana GN=CML20 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.793e-40
Identity = 81/103 (78.64%), Postives = 89/103 (86.41%), Query Frame = -2
Query:  312 NQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFG 620
            N+MIADVDKDGSGAID DEF HMMTAKIGERD+KEEL KAF IID D NGKIS  DIKR+A++LG NFTD EI EMVEEADRD DGEVN DEF+RMM+RT +G
Sbjct:   65 NKMIADVDKDGSGAIDFDEFVHMMTAKIGERDTKEELTKAFQIIDLDKNGKISPDDIKRMAKDLGENFTDAEIREMVEEADRDRDGEVNMDEFMRMMRRTAYG 167          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CML13_ORYSJ (Probable calcium-binding protein CML13 OS=Oryza sativa subsp. japonica GN=CML13 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.812e-40
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = -2
Query:  309 NQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFGY 620
            NQMIADVDKDGSG+ID +EFEHMMTAKIGERDSKEEL KAF IIDQD NGKIS  DI+RIA+ELG NFT +EI EMV+EADR+ DGE++ DEFIRMM+RT +GY
Sbjct:   66 NQMIADVDKDGSGSIDYEEFEHMMTAKIGERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTYQEIQEMVQEADRNGDGEIDFDEFIRMMRRTGYGY 169          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CML19_ARATH (Calcium-binding protein CML19 OS=Arabidopsis thaliana GN=CML19 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.968e-36
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = -2
Query:  312 NQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFG 620
            N+++A+VDK+ SGAID DEF HMMT K GERDS +EL KAF IID DNNGKIS  DIK IA+ELG NFTD +I EM+EEADRD DGEVN +EF++MMKRT++G
Sbjct:   65 NELMAEVDKNQSGAIDFDEFVHMMTTKFGERDSIDELSKAFKIIDHDNNGKISPRDIKMIAKELGENFTDNDIEEMIEEADRDKDGEVNLEEFMKMMKRTSYG 167          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.053e-32
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  318 QMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 617
            +MIAD+DKDGSG ID +EF  MMTAK+GERDS+EE+MKAF + D D  GKIS  ++KR+A+ELG N TD E+ EM++EADRD DGEVN +EF R+MK+T+
Sbjct:   47 KMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.053e-32
Identity = 64/100 (64.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  318 QMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 617
            +MIAD+DKDGSG ID +EF  MMTAK+GERDS+EE+MKAF + D D  GKIS  ++KR+A+ELG N TD E+ EM++EADRD DGEVN +EF R+MK+T+
Sbjct:   67 KMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 166          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.003e-32
Identity = 62/100 (62.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  318 QMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 617
            +MI+D+DKDGSG ID +EF  MMTAK+GERDS+EE+MKAF + D D  GKI+  ++KR+A+ELG N TD EI EM++EADRD DGE+N +EF R+MK+T+
Sbjct:   47 KMISDIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELGENLTDEEIQEMIDEADRDGDGEINEEEFFRIMKKTS 146          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CML8_ORYSJ (Probable calcium-binding protein CML8 OS=Oryza sativa subsp. japonica GN=CML8 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.389e-31
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = -2
Query:  312 NQMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTTFG 620
            +QMIA+VDKDGSG ID DEF HMMT K+GERD++EEL KAF IID+DNNGKIS  DI+R+A E G  FT  E+ EM+E AD + DGEV+ +EF++MMKR  FG
Sbjct:   85 HQMIAEVDKDGSGTIDFDEFVHMMTDKMGERDAREELNKAFKIIDKDNNGKISDVDIQRLAIETGEPFTLDEVREMIEAADENGDGEVDHEEFLKMMKRIGFG 187          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.090e-29
Identity = 57/100 (57.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  318 QMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 617
            +MI+++DKDGSG ID +EF  MMTAK+GERDS+EE++KAF + D DN+G I+  D++R+A+ELG N T+ E+ EM+ EADR+ D E++ DEFIR+MK+T+
Sbjct:   68 KMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTS 167          
BLAST of CX293866 vs. ExPASy Swiss-Prot
Match: CATR_DUNSA (Caltractin OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.228e-29
Identity = 57/100 (57.00%), Postives = 80/100 (80.00%), Query Frame = -2
Query:  318 QMIADVDKDGSGAIDLDEFEHMMTAKIGERDSKEELMKAFHIIDQDNNGKISAGDIKRIARELGVNFTDREIHEMVEEADRDHDGEVNADEFIRMMKRTT 617
            +MIAD+DK GSG ID +EF  MMT+K+GERDS+EE++KAF + D DN G I+  ++KR+A+ELG N TD E+ EM +EADR+ DG+++ DEF R+MK+T+
Sbjct:   68 KMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFITLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIMKKTS 167          
The following BLAST results are available for this feature:
BLAST of CX293866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CATR_ATRNU7.278e-4278.85Caltractin OS=Atriplex nummularia PE=2 SV=1[more]
CML20_ARATH1.793e-4078.64Probable calcium-binding protein CML20 OS=Arabidop... [more]
CML13_ORYSJ6.812e-4077.88Probable calcium-binding protein CML13 OS=Oryza sa... [more]
CML19_ARATH5.968e-3669.90Calcium-binding protein CML19 OS=Arabidopsis thali... [more]
CATR_TETST1.053e-3264.00Caltractin (Fragment) OS=Tetraselmis striata PE=2 ... [more]
CATR_SCHDU1.053e-3264.00Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
CATR_SPESI4.003e-3262.00Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]
CML8_ORYSJ3.389e-3165.05Probable calcium-binding protein CML8 OS=Oryza sat... [more]
CATR_CHLRE1.090e-2957.00Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
CATR_DUNSA9.228e-2957.00Caltractin OS=Dunaliella salina PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05001G12SK FlavSen1 Citrus clementina cDNA clone C05001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293866 ID=CX293866; Name=CX293866; organism=Citrus clementina; type=EST; length=621bp
GAGAGAGAGAGAGAACTAGTCTCGAGTTTTTTTTTTTTTTTTTTACAAGA
CTGGCAATCATGCACGAACATATGCATATTTGATTTAACAGGATCTCGAA
GCATTCCCATATATATACCTTAGACCTACACAGATCAATTAAATAACAAA
AGACAGCTACATATTAAATAAATTTGCAAGCATAAAATTTAGCCAAAACA
ATGAACCATCACTTATCAATCCATGATTATTTTCCTTTCAACTTGGCACA
AAGTATATACTACAGCTACCATGCATCAACAACCCTTCTTCATCCTTATG
GATCTCTAGTACCCGAATGTGGTCCTCTTCATCATACGGATAAACTCATC
AGCGTTTACTTCTCCATCATGATCTCTGTCTGCTTCCTCTACCATCTCAT
GAATCTCTCGGTCAGTGAAGTTTACACCCAGCTCCCTCGCAATACGCTTA
ATATCTCCAGCTGATATCTTTCCATTGTTATCTTGGTCAATGATATGGAA
TGCTTTCATGAGCTCTTCCTTAGAATCCCTTTCTCCAATCTTAGCCGTCA
TCATATGTTCAAATTCATCTAAATCAATGGCACCACTTCCATCCTTGTCG
ACATCTGCAATCATTTGATTG
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