CX293868

Overview
NameCX293868
Unique NameCX293868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9410 contig Ccv1_Contig9410:454..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.991e-64
Identity = 111/131 (84.73%), Postives = 124/131 (94.66%), Query Frame = 3
Query:    3 DSRQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWAMRVRVALYLAQALDYCSSKGRALYHDLNTYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRT 395
            DSRQFLEEA+AVGQLR+ R+ NL+GCC E EERLL+AEFMPNETL+KHLFHWE+QPMKWAMR+RVAL++AQAL+YC+SKGRALYHDLN YR+LFD D NPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRT
Sbjct:   96 DSRQFLEEAKAVGQLRNHRMANLLGCCYEDEERLLIAEFMPNETLAKHLFHWESQPMKWAMRLRVALHIAQALEYCTSKGRALYHDLNAYRVLFDDDANPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRT 226          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 8.101e-58
Identity = 99/130 (76.15%), Postives = 117/130 (90.00%), Query Frame = 3
Query:    3 DSRQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWAMRVRVALYLAQALDYCSSKGRALYHDLNTYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLR 392
            + +QF EEA  VG+LR  RL NLIG CC+G+ERLLVAEFMPN+TL+KHLFHWENQ ++WAMR+RV  Y+A+ALDYCS++GR LYHDLN YR+LFD+DG+PRLSCFGLMKNSRDGKSYSTNLA+TPPEYLR
Sbjct:  113 EPKQFAEEAWGVGKLRHNRLANLIGYCCDGDERLLVAEFMPNDTLAKHLFHWENQTIEWAMRLRVGYYIAEALDYCSTEGRPLYHDLNAYRVLFDEDGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLR 242          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.019e-33
Identity = 63/109 (57.80%), Postives = 89/109 (81.65%), Query Frame = 3
Query:    3 DSRQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWAMRVRVALYLAQALDYCSSKGRALYHDLNTYRILFDQDGNPRLSCFGLMK 329
            D + FLEEA+ VG+LR +RLVNLIG CC+G++R LVA+FM N+TL+K LF  + Q M W++R+RVA ++A+ALDYC++ G A Y++L+ Y++LFD+DG+  LSCFGLMK
Sbjct:   87 DPKLFLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQRKYQTMDWSIRLRVAYFVAEALDYCNTAGFASYNNLSAYKVLFDEDGDACLSCFGLMK 195          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.951e-19
Identity = 55/136 (40.44%), Postives = 76/136 (55.88%), Query Frame = 3
Query:    9 RQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWAMRVRVALYLAQALDYC-SSKGRALYHDLNTYRILFDQDGNPRLSCFGLMK--NSRDGKSYSTNL----AFTPPEYLRT 395
            +++L E   +GQL    LV L+G C EGE RLLV EFMP  +L  HLF    QP+ WA+R++VA+  A+ L +   +K + +Y D     IL D D N +LS FGL K   + D    ST +     +  PEY+ T
Sbjct:  135 KEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTFLHEAKSQVIYRDFKAANILLDADFNAKLSDFGLAKAGPTGDNTHVSTKVIGTHGYAAPEYVAT 270          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.327e-19
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 3
Query:    9 RQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWENQPMKWAMRVRVALYLAQALDYC-SSKGRALYHDLNTYRILFDQDGNPRLSCFGLMKNSRDGKS--YSTNL----AFTPPEYLRT 395
            +++L E   +GQL    LV L+G C EGE RLLV EFMP  +L  HLF    QP+ WA+R++VA+  A+ L +   +K + +Y D     IL D + N +LS FGL K    G     ST +     +  PEY+ T
Sbjct:  132 KEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAIGAAKGLTFLHDAKSQVIYRDFKAANILLDAEFNSKLSDFGLAKAGPTGDKTHVSTQVMGTHGYAAPEYVAT 267          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.817e-18
Identity = 59/138 (42.75%), Postives = 78/138 (56.52%), Query Frame = 3
Query:    9 RQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFH--WENQPMKWAMRVRVALYLAQALDYC-SSKGRALYHDLNTYRILFDQDGNPRLSCFGLMKNSRDG-KSY-STNL----AFTPPEYLRT 395
            +++L E   +GQ     LV LIG C E E RLLV EFMP  +L  HLF      QP+ W +R++VAL  A+ L +  SS+ R +Y D  T  IL D + N +LS FGL K+   G KS+ ST +     +  PEYL T
Sbjct:  117 QEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGLYFQPLSWKLRLKVALGAAKGLAFLHSSETRVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPIGDKSHVSTRVMGTHGYAAPEYLAT 254          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.398e-17
Identity = 56/138 (40.58%), Postives = 78/138 (56.52%), Query Frame = 3
Query:    9 RQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWEN--QPMKWAMRVRVALYLAQALDYC-SSKGRALYHDLNTYRILFDQDGNPRLSCFGLMKNSRDG-KSY-STNL----AFTPPEYLRT 395
            +++L E   +GQ     LV LIG C E E RLLV EFMP  +L  HLF   +  QP+ W +R++VAL  A+ L +  +++   +Y D  T  IL D + N +LS FGL K+   G KS+ ST +     +  PEYL T
Sbjct:  118 QEWLAEVNYLGQFSHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWTLRLKVALGAAKGLAFLHNAETSVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPTGDKSHVSTRIMGTYGYAAPEYLAT 255          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.061e-17
Identity = 54/139 (38.85%), Postives = 76/139 (54.68%), Query Frame = 3
Query:    9 RQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWEN---QPMKWAMRVRVALYLAQALDYC-SSKGRALYHDLNTYRILFDQDGNPRLSCFGLMKNSRDG-KSYST-----NLAFTPPEYLRT 395
            R++L E   +GQL    LV LIG C E E+RLLV EFM   +L  HLF   N   +P+ W +R++VAL  A+ L +  S   + +Y D+    IL D D N +LS FGL ++   G +SY +        +  PEY+ T
Sbjct:  110 REWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSDPVKVIYRDIKASNILLDSDFNAKLSDFGLARDGPMGEQSYVSTRVMGTFGYAAPEYVST 248          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.670e-16
Identity = 54/138 (39.13%), Postives = 73/138 (52.90%), Query Frame = 3
Query:    9 RQFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWEN--QPMKWAMRVRVALYLAQALDYC-SSKGRALYHDLNTYRILFDQDGNPRLSCFGLMKNS--RDGKSYSTNL----AFTPPEYLRT 395
            R++L E   +GQL    LV LIG C E E RLLV EFM   +L  HLF      QP+ W  RVR+AL  A+ L +  +++ + +Y D     IL D + N +LS FGL ++    D    ST +     +  PEYL T
Sbjct:  117 REWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENHLFRRGTFYQPLSWNTRVRMALGAARGLAFLHNAQPQVIYRDFKASNILLDSNYNAKLSDFGLARDGPMGDNSHVSTRVMGTQGYAAPEYLAT 254          
BLAST of CX293868 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 3
Query:   12 QFLEEARAVGQLRSERLVNLIGCCCEGEERLLVAEFMPNETLSKHLFHWENQ---PMKWAMRVRVALYLAQALDYCSSKGRA--LYHDLNTYRILFDQDGNPRLSCFGLMKNSRDGK-SYSTNLA----FTPPEYLRT 395
            +F  E   + ++R   LV L+G C +G E+LLV E+MP  TLS+HLF W  +   P+ W  R+ +AL +A+ ++Y         ++ DL    IL   D   +++ FGL++ + +GK S  T +A    +  PEY  T
Sbjct:  630 EFKSEIAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWSEEGLKPLLWKQRLTLALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVT 767          
The following BLAST results are available for this feature:
BLAST of CX293868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
Y5126_ARATH1.991e-6484.73Probable serine/threonine-protein kinase At5g41260... [more]
Y4523_ARATH8.101e-5876.15Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH9.019e-3357.80Probable inactive receptor-like kinase SSP OS=Arab... [more]
APK2A_ARATH1.951e-1940.44Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
APK2B_ARATH3.327e-1939.71Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
APK1A_ARATH2.817e-1842.75Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
APK1B_ARATH1.398e-1740.58Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
Y3545_ARATH9.061e-1738.85Probable receptor-like protein kinase At3g55450 OS... [more]
NAK_ARATH7.670e-1639.13Probable serine/threonine-protein kinase NAK OS=Ar... [more]
TMK1_ARATH2.232e-1534.06Probable receptor protein kinase TMK1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05001H03SK FlavSen1 Citrus clementina cDNA clone C05001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293868 ID=CX293868; Name=CX293868; organism=Citrus clementina; type=EST; length=397bp
CCGATTCCAGACAGTTCCTTGAGGAGGCAAGAGCGGTGGGGCAGTTAAGG
AGTGAGAGGTTGGTGAATTTGATAGGGTGTTGCTGTGAAGGCGAGGAGAG
ATTGCTTGTGGCTGAGTTTATGCCAAATGAGACTCTCTCTAAACATCTTT
TCCATTGGGAAAACCAACCCATGAAATGGGCAATGAGGGTGAGAGTGGCT
CTGTATCTCGCACAAGCTCTGGATTATTGCAGCAGTAAAGGGAGGGCATT
ATATCACGACCTTAATACTTATAGGATTTTATTTGATCAGGATGGTAATC
CCAGGCTCTCCTGCTTTGGCCTTATGAAGAATAGTAGAGATGGCAAGAGC
TATAGTACAAACTTGGCTTTCACTCCCCCAGAATACTTGAGAACAGG
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