CX293881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX293881 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12 Identity = 48/171 (28.07%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 28 LWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVA 522 +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+A N+GR + ++AVA Sbjct: 85 VWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVA 241
BLAST of CX293881 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12 Identity = 48/171 (28.07%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 28 LWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVA 522 +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+A N+GR + ++AVA Sbjct: 85 VWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVA 241
BLAST of CX293881 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12 Identity = 48/171 (28.07%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 28 LWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVA 522 +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L SD V+ +A+A N+GR + ++AVA Sbjct: 85 VWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVA 241
BLAST of CX293881 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.599e-11 Identity = 50/171 (29.24%), Postives = 78/171 (45.61%), Query Frame = 1 Query: 28 LWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVA 522 +WEEIV ++ Q W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G +S+T +++E+ E ++ V L +D V+ +A+A N+GR + V+A+A Sbjct: 85 VWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGRSFHVLAIA 241
BLAST of CX293881 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11 Identity = 46/171 (26.90%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 28 LWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVA 522 +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+A N+GR + ++A+A Sbjct: 85 VWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIA 241
BLAST of CX293881 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3) HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11 Identity = 46/171 (26.90%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 28 LWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVA 522 +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+A N+GR + ++A+A Sbjct: 85 VWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIA 241
BLAST of CX293881 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.652e-11 Identity = 46/171 (26.90%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 28 LWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGRPYEVIAVA 522 +WEEIV ++ W + + T V DV+F L L +DG V++YE D + L W LQ E K SC + ISWNP +G + +P + +++E++E ++ L +D V+ +A+A N+GR + ++A+A Sbjct: 85 VWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLLTV---TDPVHDIAFAPNLGRSFHILAIA 241 The following BLAST results are available for this feature:
BLAST of CX293881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX293881 ID=CX293881; Name=CX293881; organism=Citrus clementina; type=EST; length=524bpback to top |