CX293904

Overview
NameCX293904
Unique NameCX293904
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig522 contig Ccv1_Contig522:1..398. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_DICDI (Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.025e-17
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGVI 397
            QAI++SC GCFHGRT+  ISMS D  +   +GPL+ G +K D+     LE++  +  D++ GF+ EPIQGEAGV+
Sbjct:  140 QAIVISCKGCFHGRTIGVISMSDDPSSYNKYGPLMNGIIKIDYNSTQQLEEVLSQHADRVCGFIVEPIQGEAGVV 214          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_EXISA (Ornithine aminotransferase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rocD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGVI 397
            QA I+ C G FHGRT+AA+SMS + E  RGFGPLLPG     +GDI A E    E+    A F+ EPIQGEAG+I
Sbjct:  130 QAEIIVCSGNFHGRTMAAVSMSTEAEYQRGFGPLLPGFKVVPYGDIDAFEAAITEN---TAAFIVEPIQGEAGII 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_BACSU (Ornithine aminotransferase OS=Bacillus subtilis GN=rocD PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGVI 397
            QA I++C G FHGRT+ A+S+S + E  RGFGP+LPG     +GD+ AL +    +    A FLFEPIQGEAG++
Sbjct:  134 QAEIIACVGNFHGRTMLAVSLSSEEEYKRGFGPMLPGIKLIPYGDVEALRQAITPN---TAAFLFEPIQGEAGIV 205          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_GEOSW (Ornithine aminotransferase OS=Geobacillus sp. (strain WCH70) GN=rocD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            +A I+ C   FHGRT+AA+SMS   E  RGFGP+LPG     +GD+ AL+K    +    A F+FEPIQGEAG+
Sbjct:  131 KAEIIVCENNFHGRTMAAVSMSSSEEYKRGFGPMLPGIKIIPYGDVEALKKAITPN---TAAFIFEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_OCEIH (Ornithine aminotransferase OS=Oceanobacillus iheyensis GN=rocD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGVI 397
            QA I++  G FHGRTL AIS+S D +A + +GP +PG  K  +GDI A+EK   E+    A  + EPIQGEAG+I
Sbjct:  132 QAEIIAADGNFHGRTLNAISLSNDPDATKNYGPFVPGINKVSYGDINAIEKAITEN---TAAIILEPIQGEAGII 203          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_STACT (Ornithine aminotransferase OS=Staphylococcus carnosus (strain TM300) GN=rocD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  173 QAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            +A I++  G FHGRT+A +S+S + E  RG+GPLL G LK DFGD+  L+    E+    A  L EPIQGEAG+
Sbjct:  131 KAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLEGFLKVDFGDVDQLKDAINEN---TAAILVEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_BACC3 (Ornithine aminotransferase OS=Bacillus cereus (strain 03BB102) GN=rocD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  158 KLNLMQAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            K+   +A I+ C   FHGRT+ A+SMS + E  RGFGP+LPG +   +GD+ AL+     +    A F+ EPIQGEAG+
Sbjct:  126 KVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN---TAAFILEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_BACAN (Ornithine aminotransferase OS=Bacillus anthracis GN=rocD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  158 KLNLMQAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            K+   +A I+ C   FHGRT+ A+SMS + E  RGFGP+LPG +   +GD+ AL+     +    A F+ EPIQGEAG+
Sbjct:  126 KVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN---TAAFILEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_BACAC (Ornithine aminotransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rocD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  158 KLNLMQAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            K+   +A I+ C   FHGRT+ A+SMS + E  RGFGP+LPG +   +GD+ AL+     +    A F+ EPIQGEAG+
Sbjct:  126 KVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN---TAAFILEPIQGEAGI 201          
BLAST of CX293904 vs. ExPASy Swiss-Prot
Match: OAT_BACAA (Ornithine aminotransferase OS=Bacillus anthracis (strain A0248) GN=rocD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 2
Query:  158 KLNLMQAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKDDFGDITALEKIFRESGDQIAGFLFEPIQGEAGV 394
            K+   +A I+ C   FHGRT+ A+SMS + E  RGFGP+LPG +   +GD+ AL+     +    A F+ EPIQGEAG+
Sbjct:  126 KVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN---TAAFILEPIQGEAGI 201          
The following BLAST results are available for this feature:
BLAST of CX293904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
OAT_DICDI9.025e-1749.33Probable ornithine aminotransferase OS=Dictyosteli... [more]
OAT_EXISA6.468e-1556.00Ornithine aminotransferase OS=Exiguobacterium sp. ... [more]
OAT_BACSU2.458e-1450.67Ornithine aminotransferase OS=Bacillus subtilis GN... [more]
OAT_GEOSW4.635e-1351.35Ornithine aminotransferase OS=Geobacillus sp. (str... [more]
OAT_OCEIH6.054e-1350.67Ornithine aminotransferase OS=Oceanobacillus iheye... [more]
OAT_STACT3.004e-1250.00Ornithine aminotransferase OS=Staphylococcus carno... [more]
OAT_BACC35.125e-1245.57Ornithine aminotransferase OS=Bacillus cereus (str... [more]
OAT_BACAN5.125e-1245.57Ornithine aminotransferase OS=Bacillus anthracis G... [more]
OAT_BACAC5.125e-1245.57Ornithine aminotransferase OS=Bacillus anthracis (... [more]
OAT_BACAA5.125e-1245.57Ornithine aminotransferase OS=Bacillus anthracis (... [more]

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Properties
Property NameValue
Genbank descriptionC05002D01SK FlavRip1 Citrus clementina cDNA clone C05002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293904 ID=CX293904; Name=CX293904; organism=Citrus clementina; type=EST; length=398bp
TGCTTGTATAGATTTGATATAGAACTCCACTGGCTATTTAAATATTAATC
TTCACACTGTACTTCTCTGTTCTGGTAAGCCTTTAAACTAGACCCCTCTG
CTCTGATACCTATCATGTTATTTATCCCTTTTAGTGTATTGCGTCAGTCC
TTTTCTTAAACTAAACCTTATGCAGGCTATCATTGTTTCTTGTTGTGGCT
GCTTCCATGGACGCACATTGGCTGCCATTTCTATGAGCTGTGACAATGAG
GCCATTCGTGGTTTTGGACCATTGTTACCTGGCCATCTTAAGGATGATTT
TGGTGATATAACTGCTCTAGAGAAAATCTTTAGAGAAAGTGGAGATCAAA
TAGCTGGATTTCTTTTTGAACCAATTCAAGGAGAGGCTGGGGTTATAA
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