CX293906

Overview
NameCX293906
Unique NameCX293906
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10275 contig Ccv1_Contig10275:71..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.222e-81
Identity = 141/152 (92.76%), Postives = 150/152 (98.68%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKV TDKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +RDE+AKFKLCKVRSVQFGQKGIPY+NTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 1.222e-81
Identity = 140/152 (92.11%), Postives = 150/152 (98.68%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKV TDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 301.597 bits (771), Expect = 1.222e-81
Identity = 140/152 (92.11%), Postives = 150/152 (98.68%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKV TDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.222e-81
Identity = 140/152 (92.11%), Postives = 150/152 (98.68%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKV TDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++DEEAKFKLCKVRS+QFGQKGIPY+NTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 2.085e-81
Identity = 141/152 (92.76%), Postives = 150/152 (98.68%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++++RNRLKYALTYREVI+ILMQR V+VDGKV TDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEE+KFKLCKVRSVQFGQKGIPY+NTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 296.59 bits (758), Expect = 3.933e-80
Identity = 139/152 (91.45%), Postives = 149/152 (98.03%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKV TDKTYPAGFMDV+SIPKT EN+RLLYDTKGRFRL S++DE+AKFKLCKVRSVQFGQKGIPY+NTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 7.417e-79
Identity = 138/152 (90.79%), Postives = 147/152 (96.71%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREVIAILMQRHV+VDGKV TDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++  +E KFKLCKVRSVQFGQKGIPY+NTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 5.500e-74
Identity = 133/152 (87.50%), Postives = 142/152 (93.42%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREV++ILMQRH+LVDGK+     +     DVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+KFKLCKVRSVQFGQKGIPYINTY+GRTIRYPDP
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKI----HFCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP 148
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 1.554e-60
Identity = 109/152 (71.71%), Postives = 127/152 (83.55%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL  REV AILMQRHV VDGKV TD TYPAGFMDV+++  TNENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KG+PY+ T++GRTIRYPDP
Sbjct:    1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDP 152
[Close]
BLAST of CX293906 vs. ExPASy Swiss-Prot
Match: RS4_BOMMO (40S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.029e-60
Identity = 109/152 (71.71%), Postives = 126/152 (82.89%), Query Frame = 1 
Query:   31 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVMTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYNGRTIRYPDP 486
            MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT  EV+ I+ QR + VDGKV TD TYPAGFMDVVSI KTNE FRL+YD KGRF +H +  EEAK+KLCKV+ V  G K +PY+ T++GRTIRYPDP
Sbjct:    1 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDP 152
The following BLAST results are available for this feature:
BLAST of CX293906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RS4_MAIZE1.222e-8192.7640S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS43_ARATH1.222e-8192.1140S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH1.222e-8192.1140S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH1.222e-8192.1140S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU2.085e-8192.7640S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_ORYSJ3.933e-8091.4540S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_GOSHI7.417e-7990.7940S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_PRUAR5.500e-7487.5040S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_YEAST1.554e-6071.7140S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_BOMMO2.029e-6071.7140S ribosomal protein S4 OS=Bombyx mori GN=RpS4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC05002D03SK FlavRip1 Citrus clementina cDNA clone C05002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293906 ID=CX293906; Name=CX293906; organism=Citrus clementina; type=EST; length=488bp
CAGCGAGGCAGCAGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAA
GCACTTGAAGAGGCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTG
GTGGTGCATTTGCACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAA
TGCTTGCCATTGATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCAC
ATATCGTGAAGTTATTGCTATTCTGATGCAACGACATGTTCTTGTTGATG
GGAAGGTTATGACAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTG
TCAATTCCCAAGACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGG
TCGCTTCCGTCTCCATTCCCTCAGAGATGAGGAGGCAAAATTCAAGCTTT
GCAAAGTTAGATCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAAC
ACCTATAATGGGCGTACCATCCGCTACCCTGACCCACT
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