CX293914

Overview
NameCX293914
Unique NameCX293914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length533
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15184 contig Ccv1_Contig15184:1175..1707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293914 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.187e-21
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 153
            + VTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct:  327 VTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of CX293914 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.971e-20
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 153
            IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct:  369 IQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of CX293914 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.156e-18
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    1 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 153
            I VTPEE EAI RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct:  338 IAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of CX293914 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 8.570e-16
Identity = 37/51 (72.55%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 153
            + VTPEE+E+IERLEAMGFDRAIV+E F +C++NEELAANYLL+H  +FED
Sbjct:  318 VNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of CX293914 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.616e-14
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 153
            I VTP E+EAI+RLEAMGFDRA+V+E F AC++NEELAANYLL++  +FED
Sbjct:  321 INVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of CX293914 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.401e-12
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 153
            IQ+T EE E+I+RL  +GFDR IV++ + AC+KNEELAANYL +H HE ED
Sbjct:  316 IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366          
The following BLAST results are available for this feature:
BLAST of CX293914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RD23D_ARATH5.187e-2192.16Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH1.971e-2092.16Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ9.156e-1882.35Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH8.570e-1672.55Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH1.616e-1470.59Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RHP23_SCHPO4.401e-1262.75UV excision repair protein rhp23 OS=Schizosaccharo... [more]
back to top
Properties
Property NameValue
Genbank descriptionC05002E01SK FlavRip1 Citrus clementina cDNA clone C05002E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293914 ID=CX293914; Name=CX293914; organism=Citrus clementina; type=EST; length=533bp
ATACAAGTCACGCCCGAAGAACGTGAAGCCATAGAACGTCTTGAGGCAAT
GGGCTTTGATCGAGCAATTGTATTGGAGGTGTTCTTTGCCTGCAACAAGA
ATGAGGAACTTGCTGCCAACTACCTTTTAGACCATATGCATGAGTTTGAG
GATTGATTGAAAGGGGAATAGAAAAGATTCAAGATGAAAATGATGGTTAC
TACCTTTGGACGGCATTTATTAAAAAATACCTCTAATTAGTTTCTTTCCC
TTCTCATTTCTCCTCGACTTCATTTGTTAAACAAAGTTCAGATATTCATG
CTTTGGTATGTGTGGAGAGTGAACAAGTAATGCAAGATGTAACATTCTTC
AAAAAAAAAAAAGTAGCATCTTCGTTAACCAACAGAGCAGTTGTTGACAG
ATCAAGAAGAAGAGGTAAAAACGACATGTCGTGGCTAATATTTGAAGGAT
TACTGCCGTTGGGCATCATAGCAGCAATGCTAACAATTGCAGGAAATGCT
CAGTATCAAATCCACAAAGCCGCTCACGGACGA
back to top