CX293921

Overview
NameCX293921
Unique NameCX293921
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig524 contig Ccv1_Contig524:1..385. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293921 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.038e-28
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  115 YVKLRSDRELRGKLHAYDQHLNMILGDVEEVATTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 327
            YVK+R+DRELRG+LHAYDQHLNMILGDVEE  TT+EID+ETYEEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   30 YVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CX293921 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.038e-28
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  115 YVKLRSDRELRGKLHAYDQHLNMILGDVEEVATTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 327
            YVK+R+DRELRG+LHAYDQHLNMILGDVEE  TT+EID+ETYEEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   30 YVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CX293921 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 3.038e-28
Identity = 55/71 (77.46%), Postives = 66/71 (92.96%), Query Frame = 1
Query:  115 YVKLRSDRELRGKLHAYDQHLNMILGDVEEVATTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLR 327
            YVK+R+DRELRG+LHAYDQHLNMILGDVEE  TT+EID+ETYEEI ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   30 YVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of CX293921 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.475e-24
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = 1
Query:  115 YVKLRSDRELRGKLHAYDQHLNMILGDVEEVATTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 333
            +VK+R DRELRGKLHAYDQHLNMIL DVEE    VE D+ET EEI+R  +R +  LFVRGDGVIL+SPPLRT+
Sbjct:   25 FVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97          
BLAST of CX293921 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.151e-17
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  115 YVKLRSDRELRGKLHAYDQHLNMILGDVEEVATTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPP 321
            YVKLR DREL G+LHAYD+HLNM+LGD EE+ T  + ++   ++ ++T R+    LFVRGD VIL++PP
Sbjct:   23 YVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91          
The following BLAST results are available for this feature:
BLAST of CX293921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_MOUSE3.038e-2877.46U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN3.038e-2877.46U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN3.038e-2877.46U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_DICDI3.475e-2471.23Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_SCHPO3.151e-1755.07Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionC05002E09SK FlavRip1 Citrus clementina cDNA clone C05002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293921 ID=CX293921; Name=CX293921; organism=Citrus clementina; type=EST; length=385bp
AGGGGAGAGCGAGGGACAGCGAGGGAGAGCGACTGAGCAAGAATGGCAAG
CGAAGAAGAAAGCGCAGCGAAGGAGCCGTTGGATCTCATAAGGCTCATCC
TTGACCAGCGCATCTACGTTAAGCTCCGATCCGACCGTGAACTCCGCGGC
AAACTCCATGCATATGATCAACATTTAAACATGATTCTTGGGGACGTCGA
AGAAGTTGCTACTACAGTGGAAATCGATGATGAAACTTATGAAGAGATTG
TTCGGACTACAAGGCGCACTGTCCCGTTTCTCTTTGTAAGAGGGGATGGT
GTCATCCTAGTTTCTCCTCCACTGAGGACAGCTTAAATCGAAGAACAGGG
TGCACACTCGATGAAGAAACCACCAATTTTACATT
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