CX293922

Overview
NameCX293922
Unique NameCX293922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5724 contig Ccv1_Contig5724:9..517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.127e-19
Identity = 44/62 (70.97%), Postives = 55/62 (88.71%), Query Frame = 2
Query:   56 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            M++ ELAC YA LIL DDGIAIT +KIA +VKAAN+ +ESYWP+LFAKLLEKRN++DLI++V
Sbjct:    1 MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSV 62          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 9.544e-19
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 2
Query:   59 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA VSIESYWP LFAK+ EKRN+ DLIMNV
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMNV 63          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 2
Query:   59 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            +  ELAC+YA +IL D+GIAIT DKIA LVKAA V+IESYWP LFAK+ EKRN+ DLIMNV
Sbjct:    3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMNV 63          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.126e-18
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 2
Query:   59 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            +  ELAC+YA +IL D+GIAIT+DKIA LVKAA V IESYWP LFAK+ EKRN+ DLIMNV
Sbjct:    3 TVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMNV 63          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.378e-17
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 2
Query:   56 MSASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            MS SELACTYA LILHDDG+ IT D I  + KAA V +E YWP+LFAKL  K+++DDLI NV
Sbjct:    1 MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITNV 62          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.078e-14
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 2
Query:   59 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            S SELAC Y+ LILHDD + +T DKI  L+KAA VS+E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 2
Query:   59 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 2
Query:   59 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 2
Query:   59 SASELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            S SELAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI NV
Sbjct:    3 SVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63          
BLAST of CX293922 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.690e-13
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 2
Query:   65 SELACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMNV 241
            +ELAC YA LIL DD +A+T +KI  ++KAANV +E YWP LFAK LE  N+ DLI N+
Sbjct:    5 AELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNI 63          
The following BLAST results are available for this feature:
BLAST of CX293922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_MAIZE1.127e-1970.9760S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH9.544e-1973.7760S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH2.126e-1872.1360S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH2.126e-1872.1360S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE1.378e-1766.1360S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_MOUSE7.078e-1459.0260S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_RAT1.577e-1357.3860S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_HUMAN1.577e-1357.3860S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN1.577e-1357.3860S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_DROME2.690e-1359.3260S acidic ribosomal protein P1 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC05002E10SK FlavRip1 Citrus clementina cDNA clone C05002E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293922 ID=CX293922; Name=CX293922; organism=Citrus clementina; type=EST; length=509bp
GGACGAGGAGGGCACGGCGCAATCCGCAGTAGGTCTGATCTCTTGAGTCA
AAGCAATGTCGGCTTCGGAGCTTGCTTGTACTTATGCCTGTTTGATCCTC
CACGATGACGGCATCGCCATTACTACGGATAAGATTGCACAACTGGTGAA
GGCTGCCAACGTGTCTATTGAATCTTACTGGCCCAGTTTGTTTGCTAAGC
TCTTAGAGAAGCGGAACTTAGATGATCTTATAATGAATGTGGGGTCTGGT
GGTGGCGGTGGTGCAGTTGCTGTTGCAGCTCCTGCTGGAGGTGCTGGGGC
TGATGCTGCTGCTCCCCCACCGGAGGAGAAGAAGGAAGAACCCAAGGAAG
AAAGTGACGAANATATGGGCTTCAGCTTGTTTGATTAGGAGCTCCTTTCA
GAATGATTTGGTCTGGTGCTGGTTTACAACTCTTAAGATTAATTGTCTTT
TTGACCTATTAGTAGTATCTATCTTTGTTTGTTAAGATTTGAAGTATAGG
TAACCTTGA
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