CX293927

Overview
NameCX293927
Unique NameCX293927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig569 contig Ccv1_Contig569:210..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF3_ARATH (Glutathione S-transferase ERD13 OS=Arabidopsis thaliana GN=ERD13 PE=1 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 1.294e-58
Identity = 102/153 (66.67%), Postives = 131/153 (85.62%), Query Frame = 1
Query:    1 VIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKV 459
            V+ DGD+ ++ESRAIMRY AEKYRSQG +LLGKTIEERG VEQWL+VEA +Y+P +  LT+ ++F+P  G P DEK++KES+EKL + LDVYE +LSK++YLAGDF SLADL+H+PFT YLVGP+G+ H+I+DRKHVSAWWD IS+R +WK+V
Sbjct:   55 VLVDGDYKIFESRAIMRYIAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLALTLNIVFAPLMGFPADEKVIKESEEKLAEVLDVYEAQLSKNEYLAGDFVSLADLAHLPFTEYLVGPIGKAHLIKDRKHVSAWWDKISSRAAWKEV 207          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF7_ARATH (Glutathione S-transferase OS=Arabidopsis thaliana GN=At3g03190 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.037e-40
Identity = 76/155 (49.03%), Postives = 107/155 (69.03%), Query Frame = 1
Query:    4 IQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLEL 468
            I+DG   L+ESRAI RYYA KY  QGT+LLGKT+E R +V+QW+EVE + +      L M ++F PK G+P D  LV+E   K  K LDVYE RL+ ++YL GD F+LADLSH+P   Y++       ++  R++++ WW++IS RP+WKK++EL
Sbjct:   57 IEDGYLKLFESRAIARYYATKYADQGTDLLGKTLEGRAIVDQWVEVENNYFYAVALPLVMNVVFKPKSGKPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLSHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAWKKLMEL 211          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF_HYOMU (Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.209e-33
Identity = 68/153 (44.44%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLE 465
            +DGD  L+ESRAI +Y A  Y  +G +LL    ++  ++  W+EVE+  ++P   +LT +++  P  G   D+  V E++EKLGK LDVYE RL  SKYL GD F+LADL H P  +YL+G   +  +   R HVSAW  DI  RP+W K +E
Sbjct:   58 EDGDLKLFESRAITQYIAHTYADKGNQLLANDPKKMAIMSVWMEVESQKFDPVASKLTFEIVIKPMLGMVTDDAAVAENEEKLGKVLDVYESRLKDSKYLGGDSFTLADLHHAPAMNYLMGTKVKS-LFDSRPHVSAWCADILARPAWSKAIE 209          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.003e-31
Identity = 70/153 (45.75%), Postives = 96/153 (62.75%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELLGK-TIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKF-GRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKV 459
            QDGD  L+ESRAI +Y   KY+++  +LL +  + E  +V+ W EVE H YN AI  +  + + +P   G P ++K+V ES EKL K L+VYE RLS+S YLAGDF S ADL+H P+T Y +G      +     HV AWW+ +  RPS KK+
Sbjct:   59 QDGDLYLFESRAIGKYILRKYKTREADLLREGNLREAAMVDVWTEVETHQYNSAISPIVYECIINPAMRGIPTNQKVVDESAEKLKKVLEVYEARLSQSTYLAGDFVSFADLNHFPYTFYFMG-TPYASLFDSYPHVKAWWERLMARPSVKKL 210          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF2_ORYSJ (Probable glutathione S-transferase GSTF2 OS=Oryza sativa subsp. japonica GN=GSTF2 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 73/160 (45.62%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    4 IQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPK-FGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCKTP 480
            +QDGD  L+ESRAI +Y   K + +   L    ++E  +V+ WLEVE++ Y PA+  +  Q L  P  FG P DEK+V+E+ EKL K L+VYE RL+K KYLAGD+ S+ADLSH+  T   +G      ++    HV AWW D+  RPS +KV  L K P
Sbjct:   58 LQDGDLFLWESRAICKYVCRKNKPE--LLKDGDLKESAMVDVWLEVESNQYTPALNPILFQCLIRPMMFGAPPDEKVVEENLEKLKKVLEVYEARLTKCKYLAGDYISVADLSHVAGT-VCLGATPHASVLDAYPHVKAWWTDLMARPSSQKVASLMKPP 214          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF6_ARATH (Glutathione S-transferase 6, chloroplastic OS=Arabidopsis thaliana GN=GST6 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 5.664e-30
Identity = 67/158 (42.41%), Postives = 98/158 (62.03%), Query Frame = 1
Query:    4 IQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEE-RGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCK 474
            ++DGD  L+ESRAI +Y AE+Y  +G +L+ +  ++ +     WL+VE   ++P   +L  + +F   FG   D   V+E + KL K LDVYE RL+KS++LAGD F+LADL H+P  HYL+G   +  +   R  VS W   IS RP+W KV++L K
Sbjct:  106 LEDGDLTLFESRAITQYLAEEYSEKGEKLISQDCKKVKATTNVWLQVEGQQFDPNASKLAFERVFKGMFGMTTDPAAVQELEGKLQKVLDVYEARLAKSEFLAGDSFTLADLHHLPAIHYLLGTDSKV-LFDSRPKVSEWIKKISARPAWAKVIDLQK 262          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF1_MAIZE (Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 9.661e-30
Identity = 73/158 (46.20%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    4 IQDGDFILYESRAIMRYYAEKYRSQGTELLGK-TIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCK 474
            +QDGD  L+ESRAI +Y A K +    ELL +  +EE  +V+ W+EVEA+ Y  A+  +  Q+L SP  G   D+K+V E+ EKL K L+VYE RL+K KYLAGDF SLADL+H+  T  L        ++    HV AWW  +  RPS +KV  L K
Sbjct:   58 LQDGDLYLFESRAICKYAARKNKP---ELLREGNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFA-TPYASVLDAYPHVKAWWSGLMERPSVQKVAALMK 211          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF_SILCU (Glutathione S-transferase OS=Silene cucubalus GN=GST PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.262e-29
Identity = 69/160 (43.12%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    4 IQDGDFILYESRAIMRY--YAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYL-AGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCK 474
            ++DG+  L+ESRAI +Y  Y   ++++GT L+ K   E      W EVEAH ++P   +L  +L+F   FG   D  +V+E++ KL K LDVYE RL++S+YL A D F+L DL H+P   YL+G   ++ +  +R HVSAW   I  RPSW+K L L K
Sbjct:   57 LEDGEIKLFESRAITKYLAYTHDHQNEGTSLIHKEKHEMAAQLVWEEVEAHQFDPVASKLAWELVFKGIFGMQTDTTVVEENEAKLAKVLDVYEARLTESEYLGANDSFTLVDLHHLPLLGYLMGTQVKK-LFEERAHVSAWCKKILARPSWEKTLALQK 215          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF3_MAIZE (Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 1.648e-29
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   10 DGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVLELCKTP 480
            DGD +L+ESRAI RY A KY S+GT+LL  T     L E WLEVE+H+++P    L  QLL  P  G   D  +V++  E+L K LDVYE  L+++KYLAGD F+LAD +H            R   +  R HV AWW+ I+ RP+++K +     P
Sbjct:   60 DGDEVLFESRAINRYIASKYASEGTDLLPATASAAKL-EVWLEVESHHFHPNASPLVFQLLVRPLLGGAPDAAVVEKHAEQLAKVLDVYEAHLARNKYLAGDEFTLADANHALLPALTSARPPRPGCVAARPHVKAWWEAIAARPAFQKTVAAIPLP 215          
BLAST of CX293927 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.395e-28
Identity = 64/152 (42.11%), Postives = 98/152 (64.47%), Query Frame = 1
Query:    7 QDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEERGLVEQWLEVEAHNYNPAIYELTMQLLFSPKFGRPVDEKLVKESDEKLGKTLDVYEGRLSKSKYLAGDFFSLADLSHIPFTHYLVGPMGRQHMIRDRKHVSAWWDDISNRPSWKKVL 462
            +DGDF ++ESRAI +Y A ++  +G  LL  T ++  ++   +E+E+H ++P   +L  + +  P +G   D+ +V+E + KL K LDVYE RL +SKYLA D F+L DL  IP   YL+G   ++ +  +R HVSAW  DI++RPS +KVL
Sbjct:   59 EDGDFKIFESRAITQYIAHEFSDKGNNLLS-TGKDMAIIAMGIEIESHEFDPVGSKLVWEQVLKPLYGMTTDKTVVEEEEAKLAKVLDVYEHRLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKK-LFDERPHVSAWVADITSRPSAQKVL 208          
The following BLAST results are available for this feature:
BLAST of CX293927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GSTF3_ARATH1.294e-5866.67Glutathione S-transferase ERD13 OS=Arabidopsis tha... [more]
GSTF7_ARATH6.037e-4049.03Glutathione S-transferase OS=Arabidopsis thaliana ... [more]
GSTF_HYOMU3.209e-3344.44Glutathione S-transferase OS=Hyoscyamus muticus PE... [more]
GSTF1_ORYSJ3.003e-3145.75Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]
GSTF2_ORYSJ5.123e-3145.63Probable glutathione S-transferase GSTF2 OS=Oryza ... [more]
GSTF6_ARATH5.664e-3042.41Glutathione S-transferase 6, chloroplastic OS=Arab... [more]
GSTF1_MAIZE9.661e-3046.20Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE... [more]
GSTF_SILCU1.262e-2943.13Glutathione S-transferase OS=Silene cucubalus GN=G... [more]
GSTF3_MAIZE1.648e-2943.95Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE... [more]
GSTF1_ARATH1.395e-2842.11Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC05002F03SK FlavRip1 Citrus clementina cDNA clone C05002F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293927 ID=CX293927; Name=CX293927; organism=Citrus clementina; type=EST; length=517bp
GTTATTCAAGATGGAGATTTTATTTTATACGAGTCGCGAGCTATCATGAG
GTACTATGCCGAAAAGTACAGGTCTCAAGGAACCGAACTTCTGGGAAAAA
CAATTGAAGAAAGAGGCCTGGTGGAACAGTGGCTAGAAGTAGAGGCACAC
AACTACAACCCAGCAATTTACGAGCTGACCATGCAACTTTTATTTTCTCC
CAAGTTTGGACGTCCCGTTGATGAAAAATTGGTGAAGGAGAGTGACGAAA
AGCTTGGAAAAACGCTCGACGTTTACGAGGGGAGGCTGTCGAAGAGCAAG
TATTTGGCTGGTGATTTCTTCAGCCTGGCTGATCTGAGTCACATTCCATT
TACCCACTACTTGGTTGGGCCGATGGGGAGACAGCATATGATTAGAGACA
GGAAGCATGTGAGTGCTTGGTGGGATGATATTAGCAACAGGCCGTCCTGG
AAGAAAGTCCTTGAGCTTTGTAAGACTCCTTTCGGCTGAGCTTGATTGTA
TGTGTTTCGATTTTCGG
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