CX293934

Overview
NameCX293934
Unique NameCX293934
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15088 contig Ccv1_Contig15088:27..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.357e-65
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTD EKPRMRGPKRASKI
Sbjct:    1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKI 143
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 4.020e-65
Identity = 121/143 (84.62%), Postives = 125/143 (87.41%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKGE+DLPGLTDTEKPRMRGPKRASKI
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKI 143
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 6.857e-65
Identity = 121/143 (84.62%), Postives = 124/143 (86.71%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MKFN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNLVIVKKG  DLPGLTDTEKPRMRGPKRASKI
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKI 143
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.147e-42
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+I
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI 141
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.147e-42
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+I
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI 141
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.147e-42
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+I
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI 141
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.147e-42
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+I
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI 141
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.147e-42
Identity = 88/143 (61.54%), Postives = 104/143 (72.73%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+I
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI 141
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_CHICK (40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.048e-41
Identity = 85/143 (59.44%), Postives = 103/143 (72.03%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MK NI+ P TGCQK +E+DD++ +R F++KR++ EV  D+LGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVIVKKGE D+PGLTDT  PR  GPKRAS+I
Sbjct:    1 MKLNISFPATGCQKLIEVDDERNVRTFYEKRMATEVAADSLGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRI 141
[Close]
BLAST of CX293934 vs. ExPASy Swiss-Prot
Match: RS6_ICTPU (40S ribosomal protein S6 OS=Ictalurus punctatus GN=rps6 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.538e-40
Identity = 83/143 (58.04%), Postives = 103/143 (72.03%), Query Frame = 3 
Query:   84 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKI 512
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  D LG+E+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNLVI++KGE D+PGLTD+  PR  GPKRAS+I
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADPLGDEWKGYVVRISGGNDKQGFPMKQGVLTNGRVRLLLSKGHSCY--RPRRTGERKRKSVRGCIVDANLSVLNLVIIRKGEKDIPGLTDSTVPRRLGPKRASRI 141
The following BLAST results are available for this feature:
BLAST of CX293934 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RS6_ASPOF2.357e-6585.3140S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS61_ARATH4.020e-6584.6240S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS62_ARATH6.857e-6584.6240S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS6_RAT2.147e-4261.5440S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE2.147e-4261.5440S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA2.147e-4261.5440S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN2.147e-4261.5440S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN2.147e-4261.5440S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_CHICK4.048e-4159.4440S ribosomal protein S6 OS=Gallus gallus GN=RPS6 ... [more]
RS6_ICTPU1.538e-4058.0440S ribosomal protein S6 OS=Ictalurus punctatus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05002G02SK FlavRip1 Citrus clementina cDNA clone C05002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293934 ID=CX293934; Name=CX293934; organism=Citrus clementina; type=EST; length=513bp
CGGCTGCAGGAATTCGCACGAGGGAGTAGTACTAGAGCCGAAGCGCTTCT
CATCTCTTTAGCCACAGACTCTATCGAACAAAGATGAAGTTCAATATCGC
AAATCCCACCACTGGGTGCCAGAAGAAGCTCGAAATTGACGATGACCAGA
AACTTCGAGCATTTTTTGACAAGAGGATCTCTCAAGAAGTCAATGGAGAT
GCTCTTGGCGAGGAGTTCAAGGGATATGTGTTCAAGATTATGGGTGGCTG
CGACAAGCAAGGTTTTCCCATGAAGCAAGGAGTGCTGACTCCCGGCCGTG
TTCGTCTTCTGCTCCACCGTGGTACCCCTTGCTTCCGTGGGTATGGCAGG
AGAGATGGAGAGCGCAGGAGGAAGTCTGTTCGTGGATGCATAGTTAGTCC
AGATCTCTCCGTGTTGAATTTGGTCATTGTGAAAAAGGGAGAACATGACC
TTCCTGGACTTACCGATACAGAAAAGCCCAGAATGAGAGGTCCCAAGAGA
GCATCGAAGATCA
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