CX293937

Overview
NameCX293937
Unique NameCX293937
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4968 contig Ccv1_Contig4968:957..1281. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293937 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.044e-44
Identity = 86/108 (79.63%), Postives = 94/108 (87.04%), Query Frame = 1
Query:    1 LPVHHCLLALPGVRKEYLTRVISHSQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIGGNDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRT 324
            LPVHHCLLALPGVRKE+LTRVISH Q L+QCEHTLTKLGLNVAREAVDDTAGAAE+I  N+LRDT         E+YG+++LEDGIQDD SNVTRFVMLAREPIIPRT
Sbjct:  194 LPVHHCLLALPGVRKEFLTRVISHPQGLAQCEHTLTKLGLNVAREAVDDTAGAAEFIASNNLRDTAAIASARAAEIYGLEILEDGIQDDVSNVTRFVMLAREPIIPRT 301          
BLAST of CX293937 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.976e-44
Identity = 84/108 (77.78%), Postives = 95/108 (87.96%), Query Frame = 1
Query:    1 LPVHHCLLALPGVRKEYLTRVISHSQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIGGNDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRT 324
            LPVHHCL+ALPGVRKE+LTRVISH Q L+QCEHTLTKLGLNVAREAVDDTAGAAE+I  N++RDT         E+YG+++LEDGIQDD+SNVTRFVMLAREPIIPRT
Sbjct:  199 LPVHHCLIALPGVRKEFLTRVISHPQGLAQCEHTLTKLGLNVAREAVDDTAGAAEFIAANNIRDTAAIASARAAEIYGLEILEDGIQDDASNVTRFVMLAREPIIPRT 306          
BLAST of CX293937 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.386e-33
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 1
Query:    1 LPVHHCLLALPGVRKEYLTRVISHSQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIGGNDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRT 324
            +PVHHCLLALPGVR + ++RVISH QAL+Q EH+L  L  + AREA  DTA AAEYI  NDL DT         ELY +Q+L DGIQDD  NVTRF+MLAREPIIPRT
Sbjct:  203 IPVHHCLLALPGVRTDCVSRVISHPQALAQTEHSLDVLTPHAAREAFHDTAAAAEYISANDLHDTAAVASARAAELYNLQILADGIQDDPGNVTRFLMLAREPIIPRT 310          
BLAST of CX293937 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.673e-32
Identity = 69/108 (63.89%), Postives = 80/108 (74.07%), Query Frame = 1
Query:    1 LPVHHCLLALPGVRKEYLTRVISHSQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIGGNDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRT 324
            +PVHHCLLALPGVR + +TRVISH QAL+Q E +L KL    A EA  DTA AAEYI  N+L DT         ELYG+Q+L DGIQDD+ NVTRF+MLAR+PIIPRT
Sbjct:  204 IPVHHCLLALPGVRTDCITRVISHPQALAQTEGSLNKLTPKAAIEAFHDTAAAAEYIAANNLHDTAAVASARAAELYGLQILADGIQDDAGNVTRFLMLARDPIIPRT 311          
BLAST of CX293937 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.377e-26
Identity = 63/108 (58.33%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 LPVHHCLLALPGVRKEYLTRVISHSQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIGGNDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRT 324
            L V HCLLA  GV  E L RV+SH QAL+QCE+TLTKLGL   REAVDDTAGAA+ I   +L D          ++YG+ ++   IQDD  NVTRF+MLAREPIIP T
Sbjct:  177 LAVRHCLLANHGVNIEDLRRVLSHPQALAQCENTLTKLGL--VREAVDDTAGAAKQIAFENLNDAAAVASEKAAKIYGLNIVAKDIQDDCDNVTRFLMLAREPIIPGT 282          
BLAST of CX293937 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.625e-21
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 LPVHHCLLALPGVRKEYLTRVISHSQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIGGNDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRT 324
            LPV+HCLL +PGV+KE +  V+SH QAL QC ++L  LG+   R +  DTA AA+ +  +   D           +YG+ +L + IQDD +NVTRF++LAREP+IPRT
Sbjct:  184 LPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGIQ--RISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQDDVNNVTRFLILAREPMIPRT 289          
The following BLAST results are available for this feature:
BLAST of CX293937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AROD6_ARATH3.044e-4479.63Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD3_ARATH3.976e-4477.78Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD4_ARATH5.386e-3364.81Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
AROD5_ARATH2.673e-3263.89Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
AROD2_ARATH6.377e-2658.33Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
AROD1_ARATH1.625e-2147.22Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
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Properties
Property NameValue
Genbank descriptionC05002G07SK FlavRip1 Citrus clementina cDNA clone C05002G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293937 ID=CX293937; Name=CX293937; organism=Citrus clementina; type=EST; length=325bp
CTCCCGGTTCACCACTGTCTCTTGGCCTTGCCTGGCGTACGCAAAGAGTA
CCTCACGCGCGTGATTTCACATTCGCAGGCGCTCTCCCAGTGCGAGCACA
CTCTGACGAAGCTAGGGCTCAACGTCGCACGGGAGGCCGTCGACGACACG
GCCGGAGCGGCCGAGTACATCGGCGGCAACGACCTCCGCGACACAGCGGC
AATAGCCTCCGCACGCGCCGCGGAATTGTACGGAATGCAAGTCCTGGAGG
ACGGGATACAGGACGATTCGAGCAACGTGACTCGGTTCGTGATGTTGGCG
CGTGAGCCGATAATCCCGCGCACGG
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